Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DE8669_RS14550 Genome accession   NZ_CP012391
Coordinates   2089047..2089511 (-) Length   154 a.a.
NCBI ID   WP_162051247.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8669     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2084047..2094511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8669_RS10635 (DE8669_2003) - 2084922..2085752 (+) 831 WP_033908430.1 DNA-methyltransferase -
  DE8669_RS10640 (DE8669_2004) - 2085809..2086408 (-) 600 WP_002219927.1 ScaI family restriction endonuclease -
  DE8669_RS13235 - 2086410..2086625 (-) 216 WP_025458585.1 helix-turn-helix domain-containing protein -
  DE8669_RS10650 (DE8669_2005) - 2087057..2087524 (-) 468 Protein_2023 transposase -
  DE8669_RS10655 (DE8669_2006) - 2087756..2087968 (+) 213 WP_002224145.1 SWIM zinc finger domain-containing protein -
  DE8669_RS15310 - 2088152..2088420 (+) 269 Protein_2025 5'-nucleotidase -
  DE8669_RS10665 (DE8669_2007) comP 2088510..2088959 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  DE8669_RS14550 comE 2089047..2089511 (-) 465 WP_162051247.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16516.81 Da        Isoelectric Point: 10.8645

>NTDB_id=154099 DE8669_RS14550 WP_162051247.1 2089047..2089511(-) (comE) [Neisseria meningitidis strain DE8669]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=154099 DE8669_RS14550 WP_162051247.1 2089047..2089511(-) (comE) [Neisseria meningitidis strain DE8669]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment