Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DE8669_RS14265 Genome accession   NZ_CP012391
Coordinates   62748..63212 (+) Length   154 a.a.
NCBI ID   WP_025169210.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8669     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 57748..68212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8669_RS14265 comE 62748..63212 (+) 465 WP_025169210.1 ComEA family DNA-binding protein Machinery gene
  DE8669_RS13435 - 63611..63856 (+) 246 WP_021439204.1 hypothetical protein -
  DE8669_RS13440 - 63846..64007 (+) 162 WP_153309621.1 hypothetical protein -
  DE8669_RS00350 (DE8669_0064) dnaJ 64374..65495 (+) 1122 WP_002218502.1 molecular chaperone DnaJ -
  DE8669_RS00355 (DE8669_0065) - 65691..67709 (+) 2019 WP_002218503.1 OPT family oligopeptide transporter -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16478.76 Da        Isoelectric Point: 10.9585

>NTDB_id=154096 DE8669_RS14265 WP_025169210.1 62748..63212(+) (comE) [Neisseria meningitidis strain DE8669]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPATTAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=154096 DE8669_RS14265 WP_025169210.1 62748..63212(+) (comE) [Neisseria meningitidis strain DE8669]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGTGCGCCCGCACCCAAAGCCCCCGCCAAACCGGCAACGACCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721

Multiple sequence alignment