Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   DE8669_RS05655 Genome accession   NZ_CP012391
Coordinates   1093681..1096890 (+) Length   1069 a.a.
NCBI ID   WP_002223496.1    Uniprot ID   A0AB33TU86
Organism   Neisseria meningitidis strain DE8669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088681..1101890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8669_RS05635 (DE8669_1070) ccoO 1089823..1090434 (+) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -
  DE8669_RS05640 (DE8669_1071) - 1090439..1090609 (+) 171 WP_002212597.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  DE8669_RS05645 (DE8669_1072) ccoP 1090633..1091968 (+) 1336 Protein_1084 cytochrome-c oxidase, cbb3-type subunit III -
  DE8669_RS05650 (DE8669_1074) - 1092170..1093579 (+) 1410 WP_002222104.1 PepSY-associated TM helix domain-containing protein -
  DE8669_RS05655 (DE8669_1075) recC 1093681..1096890 (+) 3210 WP_002223496.1 exodeoxyribonuclease V subunit gamma Machinery gene
  DE8669_RS05660 (DE8669_1076) mtrF 1096960..1098528 (-) 1569 WP_002218865.1 AbgT family antimetabolite efflux transporter MtrF -
  DE8669_RS05665 (DE8669_1077) - 1098860..1099072 (+) 213 WP_002242936.1 hypothetical protein -
  DE8669_RS05670 (DE8669_1078) mtrR 1099165..1099797 (-) 633 WP_002216625.1 multidrug efflux system transcriptional repressor MtrR -
  DE8669_RS14350 - 1099887..1100045 (+) 159 WP_162051245.1 hypothetical protein -
  DE8669_RS05675 (DE8669_1079) mtrC 1100201..1101439 (+) 1239 WP_014580972.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -

Sequence

Protein


Download         Length: 1069 a.a.        Molecular weight: 120944.58 Da        Isoelectric Point: 4.6949

>NTDB_id=154081 DE8669_RS05655 WP_002223496.1 1093681..1096890(+) (recC) [Neisseria meningitidis strain DE8669]
MFYLYQSNRLETLAALFARIQKVKPLKSVLQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILS
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGSRDTLLHALQTDIQNLDMPSEKA
GNINTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPFFYTLECLSDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQA
VERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLETLSDIVRIWQQPATVGEWVARCRDLLETLFQTEADDQK
AVQNLENEWVKWQAETELAQFSGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWSEPHIGEAWEPAEPFEPQHADQIAEIYIEARREGQDFSQTAARIRAESLLPSGELGRLWQQDFQTAAKQIDTAVLNS
PKLPPLPYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAEMRQTFIVQSGETEILAEIA
QDRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYYGSKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLVRLLADTFAAAEKKEEAGAA

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=154081 DE8669_RS05655 WP_002223496.1 1093681..1096890(+) (recC) [Neisseria meningitidis strain DE8669]
ATGTTTTATCTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCACTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATCGGTTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTACCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGTCGTTCAGCCTGCCCGCCGGTCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCGCCTGAAGTGATGCGCTGGCGGCTGTTGGATTTGTTCCGCAGCGAGGCATTTCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCGGATTATCAGCTTGCTGGCC
AGCTTGCAGACATATTTGACCAATACCTCGTGTATCGTCCGCAGTGGATAGACGCGTGGCAGCAGGGCAGGATACTCAGT
TTGGGCGACGATGAAATCTGGCAGTCCAAACTGTGGCGTTATCTTGATGACGGCAGGCAGAGCGCGCCGCACCGTGTTGC
GTTGTGGGAAAAGCTGTTGGAATCTTTGAGCAGTGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATTTGCAGCTTTTGCACAAGCTGTCCGAACATTGCGATGTGTTCGTGTTTGCACTCAATCCGAGTGGGATG
TATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATTTAACTCAGGCAGGGCATCCGCT
GCTCGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGGAGAAACGCCGGTGT
TTGAAGAAGGCAGCCGCGATACGCTTTTGCACGCCCTGCAAACCGATATCCAAAACTTGGATATGCCGTCTGAAAAAGCG
GGAAATATTAATACGGACGACGGATCGATACGCATCGTCTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAACTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATAGCCGTATTAACCCCGAACATCGAATCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGTGCGCAGGCATTGCCGTATTCCGTTTCAGACGTGAAA
ATCAGCCGCCGACAACCGTTTTTTTATACATTGGAATGCCTGTCCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGT
GCTTGTGCTTTTAGAAACCGCACCCGTGTTGCGCCGTTTCGGACTGACTGAGGACGATTTGCCGCTTTTGCACGACATGG
TTGCCGATTTGAACGTCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTTACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAATCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAACCAAACCGCCCTGTTCGGACGTTTTGCCGCCCTCCTCGAAACCCTGTCGGATATTGTACGGATATGGCAGCAAC
CTGCGACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTCCAAACCGAAGCCGATGACCAAAAG
GCAGTCCAAAACCTCGAAAACGAATGGGTCAAATGGCAGGCGGAAACCGAATTGGCGCAATTTTCCGGACAGTTGCCGCC
GCACACCGTCATCCGCCACATCCGCCGCTTTCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCCTTTAAAGTCATCTGTCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGATTGCCAAACATCCCGCCAAAGGCGACCGCGCCCGCCGCGATGACGACCGCTACCT
GTTCCTCGAAGCCCTCATCAGCGCGCGTGAAATCCTCTACCTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAGC
TTGCCCCGTCTTCCCTGTTGGGCGAACTCATCGATACCGTTGCCGCTATGGCGGGCATCGGTAGTCGCCAACTTGCACAA
AACTGGATAGAACAGCATCCGCTGCAAGCCTTTTCACGCCGATATTTCCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCACCGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGACCAACCCGTAGAAAACG
CCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGTTTCTGGCGCAACCCCGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCCGATCAAATCGC
CGAAATCTATATTGAGGCGCGCCGCGAAGGACAAGATTTTTCCCAAACCGCCGCCCGCATCAGGGCGGAAAGCCTGCTGC
CGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACCGCTGCCAAACAAATCGACACGGCGGTTTTAAACAGT
CCCAAACTTCCTCCGCTGCCCTACGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTG
CGGACAAGTGTTTTACGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTTTGTTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAGCCGAAATGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCG
CAAGACAGGGCATTGCAGCTATTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAAACCTCGCTTGCCGCCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCT
ATTACGGCAGCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCG
CTCGAACAGCCCCTGTTTGAAAACCTCGTCCGTCTGCTTGCCGACACGTTTGCCGCAGCGGAAAAAAAGGAAGAGGCCGG
AGCAGCCTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(778-997)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

93.545

100

0.935

Multiple sequence alignment