Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA2   Type   Machinery gene
Locus tag   DE8669_RS01650 Genome accession   NZ_CP012391
Coordinates   305999..306694 (+) Length   231 a.a.
NCBI ID   WP_002248140.1    Uniprot ID   A1KVZ3
Organism   Neisseria meningitidis strain DE8669     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 306771..307736 305999..306694 flank 77


Gene organization within MGE regions


Location: 305999..307736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8669_RS01650 (DE8669_0305) dsbA2 305999..306694 (+) 696 WP_002248140.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DE8669_RS01655 (DE8669_0306) - 306771..307736 (-) 966 WP_014575384.1 IS30-like element IS1655 family transposase -

Sequence


Protein


Download         Length: 231 a.a.        Molecular weight: 25378.89 Da        Isoelectric Point: 5.3625

>NTDB_id=154058 DE8669_RS01650 WP_002248140.1 305999..306694(+) (dsbA2) [Neisseria meningitidis strain DE8669]
MKLKTLALTSLTLLALAACSKQAETSVPADSVQSSSSAPAAPAPLTEGVNYTVLSTPIPQQQAGKVEVLEFFGYFCPHCA
HLEPVLSEHIKTFKDDTYMRREHVVWGDEMKPLARLAAAVEMAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
DGKKVLAAFEASESQARAAQMEELTNKFQISGTPTVIVGGKYQVEFKDWQSGMTTIDQLVDKVREEQKKPQ

Nucleotide


Download         Length: 696 bp        

>NTDB_id=154058 DE8669_RS01650 WP_002248140.1 305999..306694(+) (dsbA2) [Neisseria meningitidis strain DE8669]
ATGAAACTGAAAACCTTAGCTTTGACTTCATTGACCCTGTTGGCATTGGCCGCTTGTAGCAAACAGGCTGAAACCAGCGT
TCCGGCAGACAGCGTCCAAAGCAGCTCATCTGCTCCGGCAGCCCCAGCCCCATTGACCGAAGGCGTGAACTACACTGTAT
TGTCCACGCCTATCCCGCAACAGCAGGCCGGCAAAGTCGAAGTCTTGGAATTTTTCGGCTACTTCTGCCCGCATTGCGCC
CATCTTGAGCCGGTCTTGAGCGAGCACATCAAAACGTTTAAAGACGATACCTATATGCGCCGGGAGCATGTCGTGTGGGG
TGATGAAATGAAACCTTTGGCACGTTTGGCGGCCGCAGTGGAAATGGCCGGTGAATCAGATAAAGCCAACAGCCATATTT
TCGATGCGATGGTTAATCAAAAAATCAATCTGGCCGATACCGATACCCTGAAAAAATGGCTGTCCGAGCAAACAGCGTTT
GACGGCAAAAAAGTATTGGCTGCATTTGAGGCTTCTGAAAGCCAAGCGCGTGCGGCTCAAATGGAAGAGTTGACCAATAA
ATTCCAAATCAGCGGCACACCGACTGTGATCGTCGGCGGCAAATACCAAGTTGAATTTAAAGACTGGCAGTCCGGTATGA
CCACGATTGACCAGTTGGTGGATAAAGTACGCGAAGAGCAGAAAAAGCCGCAATAA

Domains


Predicted by InterproScan.

(64-212)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A1KVZ3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA2 Neisseria meningitidis MC58

97.835

100

0.978

  dsbA1 Neisseria meningitidis MC58

70.815

100

0.714


Multiple sequence alignment