Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC36_RS00850 Genome accession   NZ_CP015512
Coordinates   185039..185713 (+) Length   224 a.a.
NCBI ID   WP_011078895.1    Uniprot ID   Q7MPS7
Organism   Vibrio vulnificus strain FORC_036     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 180039..190713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC36_RS00830 (FORC36_0153) - 180086..181024 (-) 939 WP_013572553.1 Kdo(2)-lipid IV(A) acyltransferase -
  FORC36_RS00835 (FORC36_0154) slmA 181028..181618 (-) 591 WP_011078898.1 nucleoid occlusion factor SlmA -
  FORC36_RS00840 (FORC36_0155) coaBC 181769..182974 (-) 1206 WP_072610254.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FORC36_RS00845 (FORC36_0156) - 183258..184925 (+) 1668 WP_013572551.1 methyl-accepting chemotaxis protein -
  FORC36_RS00850 (FORC36_0157) radC 185039..185713 (+) 675 WP_011078895.1 RadC family protein Machinery gene
  FORC36_RS00855 (FORC36_0158) rpmB 186025..186261 (+) 237 WP_011078894.1 50S ribosomal protein L28 -
  FORC36_RS00860 (FORC36_0159) rpmG 186277..186447 (+) 171 WP_011078893.1 50S ribosomal protein L33 -
  FORC36_RS00865 (FORC36_0160) - 186680..187177 (+) 498 WP_045623824.1 hypothetical protein -
  FORC36_RS00870 (FORC36_0161) mutM 187207..188016 (+) 810 WP_085760657.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FORC36_RS00875 (FORC36_0162) - 188163..190139 (+) 1977 WP_085760658.1 LTA synthase family protein -
  FORC36_RS00880 (FORC36_0163) coaD 190215..190709 (-) 495 WP_011078889.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25340.02 Da        Isoelectric Point: 7.5165

>NTDB_id=153993 FORC36_RS00850 WP_011078895.1 185039..185713(+) (radC) [Vibrio vulnificus strain FORC_036]
MSLKNLPSESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=153993 FORC36_RS00850 WP_011078895.1 185039..185713(+) (radC) [Vibrio vulnificus strain FORC_036]
ATGAGCCTAAAAAACCTGCCTAGTGAATCCATGCCAAGAGAAAAGTTGCTTCAGCGAGGGCCTCAATCTTTGTCTGATGC
TGAGTTGCTTGCGATCTTTTTACGAACAGGCACACAAGGAATGAACGTAATTGAACTCGCTGATTTTCTGTTGCGAGACT
TTGGTTCGCTGAGAAAACTCTTTTCTGCCGATGAACAGAGCTTTTGTCGTCACAAAGGATTGGGGCAGGCAAAGTACGTT
CAATTACAAGCTGTTTTGGAAATGACGCAACGTTATTTGGCCGAAACACTGCAACGTGGTGATGCGCTCACCAGTCCTCA
GCATACTAAGCTTTATCTCTCTTCCATGCTGCGCGATCGCCATCGAGAAGCGTTTTATGTGTTGTTCCTCGACAATCAAA
ATCGTGTCATTAAAGATGAGGTGATGTTTGAAGGCACCATCGATGCCGCCTCGGTCTATCCTCGGGAAGTCGTTAAAAGA
GCCTTACACTATAATGCGGCAGCTTTAATATTGGCGCACAACCATCCCTCTGGAGTGGCAGAGCCAAGCCAAGCAGACCG
GCGAATTACTCGACGTTTGAGTGACGCATTGGGCTTAGTGGATATACGGGTATTGGACCACTTTGTGGTGGGCGATGGAG
AAGTGGTTTCCTTTGCGGAAAGAGGCTGGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(4-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MPS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.241

96.429

0.513
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.375