Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   amyaer_RS05860 Genome accession   NZ_CP012375
Coordinates   1214333..1217446 (-) Length   1037 a.a.
NCBI ID   WP_046661365.1    Uniprot ID   -
Organism   Microcystis aeruginosa NIES-2481     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1209333..1222446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  amyaer_RS05835 (amyaer_1199) uvrB 1209800..1211803 (-) 2004 WP_066029654.1 excinuclease ABC subunit UvrB -
  amyaer_RS05840 (amyaer_1201) - 1211996..1212487 (+) 492 WP_066029655.1 hypothetical protein -
  amyaer_RS05845 (amyaer_1202) - 1212568..1213320 (+) 753 WP_046661363.1 class I SAM-dependent methyltransferase -
  amyaer_RS05850 (amyaer_1203) - 1213370..1213897 (+) 528 WP_235614805.1 hypothetical protein -
  amyaer_RS05855 (amyaer_1204) - 1213922..1214320 (+) 399 WP_046661364.1 hypothetical protein -
  amyaer_RS05860 (amyaer_1205) pilL-C 1214333..1217446 (-) 3114 WP_046661365.1 hybrid sensor histidine kinase/response regulator Machinery gene
  amyaer_RS05865 (amyaer_1206) - 1217553..1218215 (+) 663 WP_046661366.1 class I SAM-dependent methyltransferase -
  amyaer_RS05875 (amyaer_1208) - 1218694..1219635 (+) 942 WP_046661367.1 homogentisate phytyltransferase -
  amyaer_RS05880 (amyaer_1209) - 1219632..1221905 (+) 2274 WP_046661368.1 hypothetical protein -
  amyaer_RS05885 (amyaer_1210) - 1222070..1222438 (+) 369 WP_046661369.1 2Fe-2S iron-sulfur cluster-binding protein -

Sequence

Protein


Download         Length: 1037 a.a.        Molecular weight: 114089.64 Da        Isoelectric Point: 4.3548

>NTDB_id=153936 amyaer_RS05860 WP_046661365.1 1214333..1217446(-) (pilL-C) [Microcystis aeruginosa NIES-2481]
MMKPDSDHFFNEDLEQLLESLEDKDTDGDETLDELSFLFEQSSPPAARYGASLDQTLSFLPLEQELEELFGDSINWEEAA
TNDFYSTRGTAPKSEPEDWDYLESLLLENAAVRDSEAIITISNPNFYDSLEDLEAFLEKPTPPEQSPLPDIFESLEVFLW
ESTAAAPVAATEPLQRLESLEIAPESSPEDEFKDLEKLLEETNQVMAATPAASFSPPVGLNNLRPLVSKAFEQTMRVPIK
QLDNLSNLIGELVIKRNRLEEEQDRLRLFLDNLLNQVQNLSDVGARMQELYERTLLEGALLASGNSSGAIGYGGVKGENQ
GDSAMTGELDALEIDRFTDFHLLSQEMIELIVRVRESASDIQFVVDETDQVTRSLRQATTQLQEGMTKSRMVPFSQTADH
LPRAIHDISLKLHKQAKLKVEGGDVLIDKMILEHLNSPMIHLVNNAITHGIESPQERMAKGKPALGKISVGAFLQGNQTV
ITVSDDGAGIDANLIKLKAIEKGLISHREAQNLSTQEVYEILLHPGFTTKDQADDFSGRGVGLDVVRTSLIDVCGTVTID
SVLGKGSTFTLRLPLTLSICKALCCVSNHARIGFSMDGVEDMKDFRASDIQIDGEGRPCVFWQNTLLPFQPLSELLSCNR
QLSRGSFYTGKQEEDSFSIVILRGGNHLLAVQVDQVIGEVEIVIKQIEGPIPKTAGIAGATVLGDGTVMPVGDVLELIDI
ARGRLRIDNGGLWRQSAPPVDVETSQKSEAMVLIVDDSITVRELLSLSFIKAGYRVEQARDGQEAWEKLRGGLPCDIVFC
DIEMPRMNGLELLSNLQKDHRLAAIPVALLTSRGSERHRQVAAKLGASGYFTKPYTERDLLWAAERMIAGEVLLANSIKA
TLNQSLSSDTTIIDSNPANLLAQSSPLVLIVDDSLIVREMLAISLVKAGYRIEQARDGLEAWEKLRAGLACDLILCDIEM
PRLNGLELLSRLQENEQLQGIPVAMITSRGTPKMEHLAAAKGAKGYFVKPCIEDVLLSAAQRLIAGEVLIQKENSVD

Nucleotide


Download         Length: 3114 bp        

>NTDB_id=153936 amyaer_RS05860 WP_046661365.1 1214333..1217446(-) (pilL-C) [Microcystis aeruginosa NIES-2481]
ATGATGAAACCGGACTCGGATCATTTCTTTAACGAAGATCTCGAACAGTTGTTAGAGAGTTTAGAAGACAAAGACACCGA
CGGTGACGAGACTCTAGACGAACTCAGCTTTTTATTTGAGCAGAGTTCCCCCCCAGCGGCCAGGTATGGGGCTTCTCTTG
ACCAAACCCTGTCTTTCTTGCCCTTAGAACAGGAATTAGAGGAACTTTTTGGCGATAGCATCAATTGGGAAGAAGCCGCC
ACTAATGATTTTTATTCTACCCGTGGGACTGCTCCCAAGTCAGAACCAGAAGATTGGGATTATCTGGAATCGCTGCTGCT
AGAAAATGCAGCGGTGCGGGACTCAGAAGCAATTATAACCATCAGCAACCCGAATTTTTACGACAGCCTCGAAGACTTAG
AAGCTTTTCTGGAAAAACCCACTCCACCAGAGCAATCGCCACTGCCAGACATCTTTGAATCCCTAGAGGTCTTCCTCTGG
GAATCCACAGCAGCGGCTCCGGTGGCCGCGACAGAACCTCTCCAACGGTTAGAATCACTGGAAATTGCCCCAGAAAGCTC
CCCAGAGGATGAATTCAAAGATTTAGAAAAACTCCTCGAAGAAACCAATCAGGTGATGGCAGCGACTCCGGCGGCCAGTT
TCAGTCCACCGGTCGGGTTAAATAACCTGCGTCCTCTTGTCAGTAAAGCTTTTGAACAGACCATGCGGGTGCCGATCAAA
CAATTGGATAACCTCAGCAATCTGATCGGGGAACTGGTGATTAAACGCAATCGCCTGGAAGAGGAACAGGATCGCCTGCG
TCTCTTTTTAGATAATTTGCTTAACCAAGTCCAAAATCTCAGCGATGTGGGCGCTCGGATGCAGGAGCTCTATGAAAGAA
CCCTCCTAGAAGGGGCTTTACTGGCTAGTGGCAATTCTAGCGGTGCCATCGGTTACGGTGGAGTTAAGGGAGAAAATCAG
GGCGATTCGGCCATGACCGGGGAACTAGATGCCCTAGAGATCGACCGTTTTACCGATTTCCACTTATTATCCCAAGAGAT
GATCGAATTGATCGTGCGAGTGCGAGAATCGGCCTCTGATATTCAATTTGTCGTCGATGAAACCGATCAGGTGACGCGCA
GTCTGCGACAGGCTACCACCCAACTACAGGAAGGGATGACCAAATCACGCATGGTTCCCTTTAGTCAAACTGCCGATCAT
CTACCCCGGGCAATTCACGATATTTCCCTGAAACTGCACAAACAAGCCAAATTAAAAGTGGAAGGGGGTGATGTTCTCAT
CGATAAGATGATCCTTGAACATCTCAATAGTCCCATGATCCATCTGGTCAACAATGCGATCACCCACGGCATTGAATCAC
CCCAAGAACGCATGGCCAAAGGCAAACCCGCCCTCGGTAAGATCTCTGTGGGGGCATTCCTACAGGGAAATCAAACCGTG
ATCACCGTTAGTGATGATGGGGCTGGTATTGATGCTAATCTGATTAAACTTAAGGCGATCGAAAAAGGCCTGATCAGCCA
TCGGGAAGCTCAAAACCTCAGTACCCAAGAAGTCTATGAAATTCTTCTTCACCCCGGTTTTACTACCAAAGATCAGGCCG
ATGATTTTTCCGGTCGTGGGGTGGGTTTAGATGTGGTGCGTACCAGTTTAATCGATGTGTGCGGGACCGTTACTATTGAC
TCGGTACTGGGCAAAGGAAGCACTTTTACGCTCCGTTTACCCCTAACCCTGAGTATCTGTAAGGCCCTCTGTTGCGTTAG
TAATCATGCTCGCATCGGTTTCTCCATGGACGGAGTGGAAGATATGAAGGATTTCCGGGCCAGCGATATCCAAATAGATG
GGGAGGGACGGCCCTGTGTTTTCTGGCAAAACACTTTACTGCCTTTCCAACCCTTGAGCGAATTGCTTTCTTGCAATCGA
CAACTAAGTCGCGGTAGTTTTTACACTGGCAAACAGGAGGAAGACTCTTTTTCGATCGTGATCCTGCGCGGTGGTAATCA
TCTCCTCGCGGTACAGGTGGATCAAGTGATCGGTGAAGTGGAAATCGTCATCAAACAGATCGAAGGACCGATTCCGAAAA
CGGCTGGGATTGCTGGGGCGACGGTTTTAGGGGATGGTACGGTGATGCCCGTCGGCGATGTGTTAGAGTTAATCGACATC
GCCAGGGGTCGTCTGCGTATCGATAACGGTGGTCTTTGGCGCCAATCTGCCCCCCCTGTAGATGTGGAAACTAGCCAAAA
ATCCGAGGCTATGGTTCTGATTGTCGATGATTCGATTACTGTCCGGGAATTGCTCTCTTTAAGCTTTATTAAAGCCGGTT
ATCGTGTGGAACAGGCCCGGGATGGTCAAGAAGCTTGGGAAAAATTACGCGGTGGTTTGCCCTGTGATATCGTTTTCTGC
GATATCGAGATGCCCCGCATGAATGGACTAGAATTACTGTCTAATTTGCAAAAAGACCACAGATTAGCGGCGATTCCCGT
GGCTTTGTTGACTTCCCGAGGATCGGAACGTCATCGTCAGGTGGCGGCGAAATTAGGGGCTAGTGGTTATTTTACCAAGC
CCTACACGGAAAGAGATTTACTCTGGGCAGCTGAAAGAATGATTGCGGGGGAAGTATTACTAGCTAATAGTATTAAAGCG
ACTCTTAATCAGTCTTTATCCTCTGATACAACGATTATTGATAGTAATCCCGCTAATTTGCTGGCACAATCGAGTCCTCT
CGTCTTGATTGTCGATGATTCGTTAATAGTGCGGGAAATGTTAGCGATTTCTTTGGTTAAAGCTGGTTATCGCATTGAAC
AGGCCCGGGACGGTTTAGAAGCATGGGAAAAATTACGGGCCGGTTTGGCTTGTGATCTGATTCTCTGCGATATCGAAATG
CCTCGCCTGAATGGGTTAGAATTGCTCTCTCGTCTGCAAGAGAATGAACAACTTCAGGGGATACCAGTGGCGATGATTAC
CTCGCGAGGGACGCCAAAAATGGAGCATCTCGCCGCCGCTAAAGGAGCAAAAGGTTATTTTGTCAAGCCCTGTATTGAGG
ATGTTTTACTGTCGGCAGCCCAACGTTTAATCGCTGGTGAAGTATTAATCCAAAAAGAAAATTCCGTGGATTAA

Domains

Predicted by InterproScan.

CheW-like domain (CheW)

(584-719)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(233-357)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(440-576)

Response regulator receiver domain (Response_reg)

(908-1019)

Response regulator receiver domain (Response_reg)

(752-861)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

62.635

89.296

0.559

Multiple sequence alignment