Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   F822_RS12470 Genome accession   NZ_CP012371
Coordinates   2735322..2736122 (+) Length   266 a.a.
NCBI ID   WP_025042045.1    Uniprot ID   -
Organism   Nitrosospira briensis C-128     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2730322..2741122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F822_RS12445 - 2730497..2730964 (-) 468 WP_025042050.1 hypothetical protein -
  F822_RS12450 rimO 2731173..2732510 (-) 1338 WP_025042049.1 30S ribosomal protein S12 methylthiotransferase RimO -
  F822_RS12455 - 2732620..2733426 (-) 807 WP_025042048.1 ZIP family metal transporter -
  F822_RS12460 pgeF 2733571..2734305 (-) 735 WP_025042047.1 peptidoglycan editing factor PgeF -
  F822_RS12465 rluD 2734322..2735320 (-) 999 WP_231623608.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  F822_RS12470 comL 2735322..2736122 (+) 801 WP_025042045.1 outer membrane protein assembly factor BamD Machinery gene
  F822_RS12475 - 2736182..2736679 (-) 498 WP_025042044.1 universal stress protein -
  F822_RS12480 - 2736801..2737484 (-) 684 WP_025042043.1 arylesterase -
  F822_RS12485 - 2737483..2738169 (+) 687 WP_025042042.1 ABC transporter ATP-binding protein -
  F822_RS12490 - 2738335..2739471 (+) 1137 WP_025042041.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30357.41 Da        Isoelectric Point: 8.5274

>NTDB_id=153899 F822_RS12470 WP_025042045.1 2735322..2736122(+) (comL) [Nitrosospira briensis C-128]
MSRSVALFLVLLLSACGLLSKEVKDSKNWSASKYYSEAKSELNEGNYGGAIKLFEALEARYPYGRFAQQAQLEVAYAYYK
DGEPATAIAAADRFIKLHPNHTNVDYAYYLKGLSNFNDDLGLMGIVSEKILNQDMSERDPKASRESFENFKELVSRYPKS
KYAADAVQRMKHLVNVVALNEVQVARYYIKRGGYVAAANRAQYALKEYPQTPATEEALFIMMKSYDALGMTDLRDDAHRV
MKKNFPDSRFFEDSTGKSAEPWWRFW

Nucleotide


Download         Length: 801 bp        

>NTDB_id=153899 F822_RS12470 WP_025042045.1 2735322..2736122(+) (comL) [Nitrosospira briensis C-128]
ATGTCACGTAGTGTAGCTTTATTTCTGGTGTTGCTGCTATCCGCATGCGGGCTGTTGTCCAAAGAGGTGAAGGACTCCAA
GAATTGGTCCGCAAGCAAGTACTACTCTGAAGCAAAGTCGGAATTGAACGAAGGGAATTATGGAGGCGCCATCAAGCTAT
TCGAAGCGCTGGAGGCACGTTATCCCTACGGCCGCTTTGCGCAGCAGGCGCAGCTTGAAGTCGCGTATGCCTATTATAAA
GATGGCGAACCGGCCACGGCTATTGCGGCTGCCGACCGCTTTATCAAGCTTCACCCCAATCATACCAATGTCGATTATGC
GTATTACCTCAAGGGCCTGTCGAATTTCAACGACGATCTCGGATTGATGGGCATCGTGTCGGAAAAAATTCTCAATCAGG
ATATGAGCGAGCGTGATCCGAAAGCGTCACGCGAATCATTTGAAAATTTCAAGGAATTAGTGTCCCGCTATCCCAAAAGC
AAATACGCGGCCGATGCGGTGCAGCGAATGAAGCATCTGGTTAATGTAGTGGCTTTGAATGAAGTCCAGGTGGCACGTTA
TTACATCAAGCGGGGCGGTTACGTTGCCGCTGCCAACCGTGCTCAATATGCGCTGAAGGAATACCCGCAGACTCCGGCCA
CGGAAGAAGCGTTATTCATCATGATGAAATCGTACGATGCGCTGGGCATGACCGATTTGCGTGACGATGCGCATCGCGTG
ATGAAAAAAAATTTCCCCGATAGCCGATTCTTCGAGGATTCAACTGGAAAAAGCGCTGAACCCTGGTGGAGATTCTGGTA
A

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(30-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.057

99.624

0.489
  comL Neisseria gonorrhoeae MS11

47.925

99.624

0.477

Multiple sequence alignment