Detailed information NTG0153897

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: F822_RS11620
• Genome accession: NZ_CP012371
• Coordinates: 2582648..2583523 (+)
• Length: 291 a.a.
• NCBI ID: WP_025041113.1
• Uniprot ID: -
• Organism: Nitrosospira briensis C-128
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2577648..2588523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F822_RS11595	dut	2577779..2578228 (+)	450	WP_025041118.1	dUTP diphosphatase	-
F822_RS15780	-	2578271..2578903 (+)	633	WP_025041117.1	DUF192 domain-containing protein	-
F822_RS11605	ffh	2578948..2580297 (-)	1350	WP_025041116.1	signal recognition particle protein	-
F822_RS11610	-	2580364..2581191 (+)	828	WP_025041115.1	inner membrane protein YpjD	-
F822_RS11615	-	2581337..2582632 (+)	1296	WP_197272915.1	HlyC/CorC family transporter	-
F822_RS11620	pilD	2582648..2583523 (+)	876	WP_025041113.1	A24 family peptidase	Machinery gene
F822_RS11625	coaE	2583527..2584132 (+)	606	WP_025041112.1	dephospho-CoA kinase	-
F822_RS11630	zapD	2584241..2584996 (+)	756	WP_025041111.1	cell division protein ZapD	-
F822_RS11635	ispD	2585170..2585865 (+)	696	WP_025041110.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
F822_RS11640	ispF	2585890..2586384 (+)	495	WP_025041109.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F822_RS11645	thpR	2586371..2586946 (+)	576	WP_025041108.1	RNA 2',3'-cyclic phosphodiesterase	-
F822_RS11650	-	2587156..2587596 (-)	441	WP_025041107.1	host attachment protein	-
F822_RS11655	tsaB	2587741..2588424 (+)	684	WP_025041106.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32145.92 Da
• Isoelectric Point: 6.9984

>NTDB_id=153897 F822_RS11620 WP_025041113.1 2582648..2583523(+) (pilD) [Nitrosospira briensis C-128]
MSFLYLLQNSPAFFISCCSIVGLAMGSFLNVVIYRLPKMLELEWRQHCAQLGGHLREEGEGEALPPFNIVVPRSACPDCG
HKITVLENIPLISYLVLRGRCSQCRASISGRYPAVEVFTGFISGFIAWHFGYGFTAFTALMFAWAMIALTFIDMDTQLLP
DAITSPLLWGGLLVNLGNGFTDIYSAVIGAVAGYLVLWLVYWGYKLITGKEGMGYGDFKLLAVIGAWFGWQMLPLVILFS
SIVGTIASVGLILLAKQERHARIPFGPYLASAGFVAMFWGNQLNHIYLDLF

Nucleotide

• Length: 876 bp

>NTDB_id=153897 F822_RS11620 WP_025041113.1 2582648..2583523(+) (pilD) [Nitrosospira briensis C-128]
ATGTCATTTCTTTACCTGTTGCAAAACTCACCCGCTTTTTTCATATCATGCTGCTCCATCGTTGGCCTGGCAATGGGCAG
TTTTTTGAATGTGGTCATTTACCGACTCCCTAAAATGCTGGAGCTCGAATGGCGGCAGCACTGTGCCCAACTGGGCGGGC
ATCTGCGTGAGGAAGGGGAGGGTGAGGCGCTGCCGCCTTTTAATATTGTCGTGCCTCGTTCCGCCTGCCCTGATTGCGGG
CATAAAATCACGGTACTCGAAAATATTCCGTTGATAAGTTATCTGGTGTTGAGAGGGCGTTGCTCCCAATGCCGGGCTTC
CATTTCGGGACGCTATCCCGCTGTCGAAGTATTCACCGGCTTTATCAGTGGCTTTATTGCCTGGCATTTCGGTTATGGTT
TTACCGCTTTTACCGCGTTGATGTTCGCTTGGGCGATGATCGCACTGACGTTTATCGACATGGATACTCAATTGCTTCCG
GACGCCATTACCTCGCCGCTTTTATGGGGAGGGTTGCTGGTCAATCTGGGCAATGGCTTCACCGATATTTATTCCGCGGT
TATCGGTGCGGTTGCCGGTTATCTCGTGTTGTGGCTGGTATATTGGGGTTATAAACTCATCACCGGTAAGGAAGGCATGG
GTTATGGTGATTTCAAGCTGCTTGCCGTCATTGGGGCGTGGTTCGGGTGGCAAATGCTGCCGCTGGTGATTCTGTTTTCT
TCAATTGTGGGTACCATAGCCAGTGTCGGGTTGATACTGCTGGCAAAGCAGGAGCGTCATGCTCGCATTCCGTTTGGCCC
TTATCTGGCTAGTGCAGGTTTCGTGGCTATGTTCTGGGGTAACCAGCTTAATCATATCTATTTAGACCTATTTTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-130)

• Type IV leader peptidase family (Peptidase_A24) (141-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.143	96.22	0.502
pilD	Vibrio campbellii strain DS40M4	51.237	97.251	0.498
pilD	Acinetobacter nosocomialis M2	48.592	97.595	0.474
pilD	Acinetobacter baumannii D1279779	48.592	97.595	0.474
pilD	Neisseria gonorrhoeae MS11	44.867	90.378	0.405