Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   AS891_RS14405 Genome accession   NZ_CP015375
Coordinates   2685973..2687976 (-) Length   667 a.a.
NCBI ID   WP_003245397.1    Uniprot ID   P45694
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2680973..2692976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS14355 (AS891_14350) sspO 2681385..2681531 (+) 147 WP_003244839.1 acid-soluble spore protein SspO -
  AS891_RS14360 (AS891_14355) sspP 2681563..2681709 (+) 147 WP_003221237.1 small acid-soluble spore protein P -
  AS891_RS14365 (AS891_14360) cotM 2681790..2682182 (+) 393 WP_010886520.1 outer spore coat protein CotM -
  AS891_RS14370 (AS891_14365) yneK 2682416..2682844 (+) 429 WP_003231580.1 DynA interaction protein YneK -
  AS891_RS14375 (AS891_14370) yneJ 2682875..2683366 (-) 492 WP_010886519.1 CcdC family protein -
  AS891_RS14380 (AS891_14375) yneI 2683445..2683807 (-) 363 WP_003245707.1 response regulator -
  AS891_RS14385 (AS891_14380) ccdA 2683896..2684603 (-) 708 WP_003231585.1 cytochrome c-type biogenesis protein CcdA -
  AS891_RS14390 (AS891_14385) ynzD 2684823..2684996 (+) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  AS891_RS14395 (AS891_14390) yneF 2685070..2685288 (-) 219 WP_003221221.1 YneF family protein -
  AS891_RS14400 (AS891_14395) sirA 2685374..2685820 (-) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  AS891_RS14405 (AS891_14400) recP/tkt 2685973..2687976 (-) 2004 WP_003245397.1 transketolase Machinery gene
  AS891_RS14410 (AS891_14405) ynzC 2688145..2688378 (-) 234 WP_003231595.1 DUF896 domain-containing protein -
  AS891_RS14415 (AS891_14410) dinL 2688442..2689095 (-) 654 WP_003231596.1 YneB family resolvase-like protein -
  AS891_RS14420 (AS891_14415) yneA 2689114..2689431 (-) 318 WP_003231598.1 cell division suppressor protein YneA -
  AS891_RS14425 (AS891_14420) dinR/lexA 2689581..2690198 (+) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  AS891_RS23180 - 2690535..2690831 (-) 297 WP_223257629.1 hypothetical protein -
  AS891_RS14435 (AS891_14430) fosM 2690740..2691174 (-) 435 WP_003231604.1 FosM family fosfomycin resistance protein -
  AS891_RS14440 (AS891_14435) - 2691382..2691831 (+) 450 WP_003245454.1 YndM family protein -
  AS891_RS14445 (AS891_14440) pghL 2691858..2692616 (-) 759 WP_003245793.1 gamma-polyglutamate hydrolase PghL -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72344.44 Da        Isoelectric Point: 4.7291

>NTDB_id=153644 AS891_RS14405 WP_003245397.1 2685973..2687976(-) (recP/tkt) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFVLSAGHGSALLYSMLHLSG
FDLSIEDLKGFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLQLGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIEELTAAIEKARQNEKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGKEESKLTKEAYAWTYEEDFYVPSEVYEHFAVAVKESGEKKEQEWNAQFAKYKE
VYPELAEQLELAIKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGLAKKIPFFVGGSADLAGSNKTTIKNAGDFTAVDY
SGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPVEQLA
SLRAMPNLSLIRPADGNETAAAWKLAVQSTDHPTALVLTRQNLPTIDQTSEEALAGVEKGAYVVSKSKNETPDALLIASG
SEVGLAIEAQAELAKENIDVSVVSMPSMDRFEKQSDEYKNEVLPADVKKRLAIEMGSSFGWGKYTGLEGDVLGIDRFGAS
APGETIINEYGFSVPNVVNRVKALINK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=153644 AS891_RS14405 WP_003245397.1 2685973..2687976(-) (recP/tkt) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
ATGGATACAATTGAAAAGAAATCAGTTGCTACCATTCGCACACTGTCAATAGACGCTATTGAAAAAGCAAATTCTGGTCA
CCCAGGGATGCCGATGGGAGCCGCTCCAATGGCATACACGCTGTGGACAAAATTTATGAACGTAAGTCCGGCAAACCCTG
GCTGGTTTAACCGTGACCGTTTTGTTTTATCTGCTGGACACGGGTCAGCACTATTATACAGCATGCTTCATTTAAGCGGG
TTTGATCTTAGTATTGAAGATCTTAAGGGATTCCGCCAGTGGGGCAGCAAAACACCAGGACATCCGGAATTCGGACATAC
TGCCGGTGTTGATGCTACAACAGGTCCGCTTGGCCAAGGAATTGCCATGGCAGTCGGTATGGCAATTGCTGAACGCCATT
TAGCGGAAACATACAACCGCGATTCATTTAACGTAGTCGATCATTATACATACAGTATTTGCGGTGATGGTGATTTAATG
GAAGGTATTTCTTCTGAAGCCGCTTCACTCGCAGGCCATCTTCAGCTTGGCCGTCTGATCGTACTATACGATTCTAATGA
CATCTCTCTTGATGGAGACCTCGACCGTTCATTCTCTGAAAACGTGAAACAGCGTTTTGAAGCAATGAATTGGGAAGTTC
TTTATGTTGAGGATGGAAACAATATTGAAGAATTAACAGCGGCTATCGAAAAAGCACGCCAAAATGAAAAGAAACCTACA
TTAATTGAAGTGAAAACGACAATCGGATTCGGTTCACCTAACCGTGCCGGTACATCCGGTGTTCACGGTGCGCCGCTTGG
TAAAGAAGAAAGCAAATTAACAAAAGAAGCTTACGCGTGGACATATGAAGAAGACTTCTACGTTCCGTCAGAAGTTTATG
AGCATTTCGCTGTAGCTGTTAAAGAATCAGGTGAGAAAAAAGAACAAGAATGGAATGCTCAATTCGCTAAATATAAAGAA
GTTTATCCTGAACTTGCTGAACAGCTTGAACTGGCAATCAAAGGAGAGCTTCCGAAGGACTGGGATCAAGAGGTTCCTGT
GTATGAAAAAGGAAGCAGTTTGGCATCCCGTGCATCTTCCGGTGAAGTTCTCAACGGACTTGCGAAAAAAATTCCTTTCT
TTGTCGGAGGTTCTGCTGACCTAGCGGGATCGAACAAAACGACTATTAAAAATGCCGGTGATTTTACAGCGGTTGATTAC
TCAGGCAAAAACTTCTGGTTTGGTGTACGTGAATTTGCGATGGGTGCGGCCTTAAACGGTATGGCGCTTCATGGCGGTCT
TCGTGTATTCGGCGGAACTTTCTTTGTCTTCTCTGATTACCTGCGTCCTGCGATTCGCCTTGCAGCGTTAATGGGCCTTC
CTGTGACATATGTCTTCACACATGACAGTATTGCGGTTGGTGAAGACGGTCCGACGCACGAGCCTGTTGAACAGCTTGCT
TCACTCCGTGCGATGCCTAACCTTTCTTTGATCCGTCCAGCAGACGGCAATGAGACAGCAGCAGCATGGAAGCTTGCAGT
GCAAAGCACTGACCACCCAACAGCGCTAGTGCTTACACGTCAAAACCTTCCTACCATCGATCAAACATCTGAAGAAGCAT
TGGCAGGAGTAGAAAAAGGTGCATATGTCGTTTCTAAATCTAAAAACGAAACACCTGACGCTCTTCTCATCGCTTCCGGA
TCAGAGGTAGGTCTTGCAATTGAAGCGCAGGCTGAATTGGCAAAAGAAAATATCGATGTTTCTGTTGTCAGCATGCCTTC
AATGGACCGTTTTGAGAAACAATCTGATGAATACAAAAACGAAGTCCTTCCTGCAGATGTGAAAAAACGTCTTGCAATTG
AAATGGGCTCATCATTTGGATGGGGCAAATACACGGGGCTTGAAGGTGACGTTCTCGGCATAGACCGATTCGGTGCATCT
GCTCCTGGTGAAACCATCATTAACGAATACGGCTTCTCAGTTCCGAACGTAGTGAATCGAGTTAAGGCATTAATCAATAA
GTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-657)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P45694

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.647

99.25

0.562