Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AKI39_RS17455 Genome accession   NZ_CP012334
Coordinates   3877372..3878154 (+) Length   260 a.a.
NCBI ID   WP_274532997.1    Uniprot ID   -
Organism   Bordetella sp. H567     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3872372..3883154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKI39_RS17435 (AKI39_17415) phbB 3872868..3873605 (-) 738 WP_066638794.1 acetoacetyl-CoA reductase -
  AKI39_RS17440 (AKI39_17420) phaC 3873708..3875366 (-) 1659 WP_066638797.1 class I poly(R)-hydroxyalkanoic acid synthase -
  AKI39_RS17445 (AKI39_17425) pgeF 3875492..3876232 (-) 741 WP_066638806.1 peptidoglycan editing factor PgeF -
  AKI39_RS17450 (AKI39_17430) - 3876288..3877247 (-) 960 WP_066638807.1 RluA family pseudouridine synthase -
  AKI39_RS17455 (AKI39_17435) comL 3877372..3878154 (+) 783 WP_274532997.1 outer membrane protein assembly factor BamD Machinery gene
  AKI39_RS17460 (AKI39_17440) - 3878448..3880682 (-) 2235 WP_066638808.1 ATP-dependent DNA helicase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29620.30 Da        Isoelectric Point: 6.4931

>NTDB_id=153586 AKI39_RS17455 WP_274532997.1 3877372..3878154(+) (comL) [Bordetella sp. H567]
MALALTALLAACGTSGAKYDKTANWSAEQLYNDAKQEMDAGNWKDARERLTAVESRYPFGVYAQQALINLAYVNWKDGEN
DQALAAIDRFQQLYPNHPGTDYVLYLKGLINFTPASAFMTNITGQDPSERDPKGLRASYDAFNELIKRYPDSKYAADARL
RVVWLVNAIAMNEVHVARYYYERGAYIAAANRAQTVITDFQGAPASEEALYILYKSYEKLKMPQLEADARRVLNTNFPNS
KYPTQGFKQDKNWWDPWSWM

Nucleotide


Download         Length: 783 bp        

>NTDB_id=153586 AKI39_RS17455 WP_274532997.1 3877372..3878154(+) (comL) [Bordetella sp. H567]
CTGGCGCTTGCCCTTACCGCCCTGCTGGCTGCCTGCGGCACCAGCGGCGCCAAGTACGACAAGACCGCCAACTGGAGCGC
GGAACAGCTCTACAACGACGCCAAGCAGGAAATGGACGCCGGCAACTGGAAAGACGCCCGCGAACGCCTGACGGCCGTCG
AAAGCCGCTATCCGTTCGGCGTGTACGCGCAACAGGCTTTGATCAACCTGGCCTACGTCAATTGGAAGGACGGTGAAAAC
GACCAGGCGCTGGCGGCCATCGACCGGTTCCAGCAGTTGTATCCCAACCATCCCGGCACCGACTACGTGCTGTACCTGAA
GGGACTGATCAATTTCACGCCGGCCAGCGCGTTCATGACGAACATCACCGGCCAGGATCCCAGCGAACGCGATCCCAAGG
GGCTGCGCGCCTCGTATGACGCATTCAACGAACTGATCAAGCGCTACCCGGACAGCAAGTACGCCGCCGACGCCCGCCTG
CGCGTGGTGTGGCTGGTGAATGCCATTGCCATGAACGAAGTGCACGTGGCGCGCTACTACTACGAACGCGGCGCCTATAT
CGCGGCCGCCAACCGCGCGCAGACCGTGATCACGGACTTCCAGGGCGCGCCGGCTTCGGAAGAAGCGCTGTACATCCTGT
ACAAGTCCTACGAAAAGCTGAAGATGCCGCAGCTGGAAGCCGATGCCCGCCGGGTGTTGAACACCAACTTCCCCAACAGC
AAATACCCCACGCAAGGCTTCAAGCAGGACAAGAACTGGTGGGATCCCTGGAGCTGGATGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(26-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

48.092

100

0.485
  comL Neisseria gonorrhoeae MS11

47.328

100

0.477

Multiple sequence alignment