Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AKO66_RS17940 Genome accession   NZ_CP012330
Coordinates   3524882..3525310 (+) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain NJ-V     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3519882..3530310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO66_RS17925 (AKO66_17855) - 3520471..3522456 (-) 1986 WP_017366593.1 hydantoinase B/oxoprolinase family protein -
  AKO66_RS17930 (AKO66_17860) - 3522446..3524515 (-) 2070 WP_017366592.1 hydantoinase/oxoprolinase family protein -
  AKO66_RS17940 (AKO66_17870) nucA/comI 3524882..3525310 (+) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AKO66_RS17945 (AKO66_17875) - 3525437..3527134 (+) 1698 WP_057078564.1 methyl-accepting chemotaxis protein -
  AKO66_RS17950 (AKO66_17880) comJ 3527271..3527657 (+) 387 WP_035703161.1 competence protein ComJ -
  AKO66_RS17955 (AKO66_17885) - 3527654..3528466 (-) 813 WP_057078565.1 aminoglycoside N(3)-acetyltransferase -
  AKO66_RS17960 (AKO66_17890) - 3528491..3528910 (-) 420 WP_048002430.1 Lrp/AsnC family transcriptional regulator -
  AKO66_RS17965 (AKO66_17895) - 3529026..3529790 (+) 765 WP_039963201.1 MBL fold metallo-hydrolase -
  AKO66_RS17970 (AKO66_17900) - 3529837..3530166 (-) 330 WP_007498247.1 YckD family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=153531 AKO66_RS17940 WP_007498233.1 3524882..3525310(+) (nucA/comI) [Bacillus altitudinis strain NJ-V]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=153531 AKO66_RS17940 WP_007498233.1 3524882..3525310(+) (nucA/comI) [Bacillus altitudinis strain NJ-V]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment