Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AKO66_RS03090 Genome accession   NZ_CP012330
Coordinates   625279..625968 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain NJ-V     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 620279..630968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO66_RS03070 (AKO66_03060) - 620962..622029 (+) 1068 WP_007499956.1 glycosyltransferase family 4 protein -
  AKO66_RS03075 (AKO66_03065) - 622067..623164 (-) 1098 WP_007499958.1 LCP family protein -
  AKO66_RS03080 (AKO66_03070) - 623149..623817 (-) 669 WP_017357860.1 YigZ family protein -
  AKO66_RS03085 (AKO66_03075) degS 624039..625214 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AKO66_RS03090 (AKO66_03080) degU 625279..625968 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AKO66_RS03095 (AKO66_03085) - 626180..627022 (+) 843 WP_024719242.1 DegV family protein -
  AKO66_RS03100 (AKO66_03090) comFA 627142..628521 (+) 1380 WP_141116131.1 DEAD/DEAH box helicase Machinery gene
  AKO66_RS03105 (AKO66_03095) - 628586..628879 (+) 294 WP_035701582.1 late competence development ComFB family protein -
  AKO66_RS03110 (AKO66_03100) comFC 628981..629562 (+) 582 WP_234781022.1 ComF family protein Machinery gene
  AKO66_RS03115 (AKO66_03105) - 629619..630038 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  AKO66_RS03120 (AKO66_03110) flgM 630118..630381 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AKO66_RS03125 (AKO66_03115) - 630400..630882 (+) 483 WP_007499977.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=153481 AKO66_RS03090 WP_008348273.1 625279..625968(+) (degU) [Bacillus altitudinis strain NJ-V]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=153481 AKO66_RS03090 WP_008348273.1 625279..625968(+) (degU) [Bacillus altitudinis strain NJ-V]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment