Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A6E92_RS23600 Genome accession   NZ_CP015362
Coordinates   5542645..5543334 (-) Length   229 a.a.
NCBI ID   WP_084995898.1    Uniprot ID   A0ABY2PKD4
Organism   Streptomyces sp. S8     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5537645..5548334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E92_RS23575 (A6E92_23165) - 5537844..5538419 (+) 576 WP_084995895.1 hypothetical protein -
  A6E92_RS23580 (A6E92_23170) - 5538472..5538972 (+) 501 WP_084997183.1 MerR family transcriptional regulator -
  A6E92_RS23585 (A6E92_23175) - 5538972..5540018 (+) 1047 WP_084995896.1 aldo/keto reductase -
  A6E92_RS23590 (A6E92_23180) - 5540099..5541325 (-) 1227 WP_028415383.1 acyltransferase -
  A6E92_RS23595 (A6E92_23185) - 5541322..5542380 (-) 1059 WP_084995897.1 alpha/beta hydrolase -
  A6E92_RS23600 (A6E92_23190) vraR 5542645..5543334 (-) 690 WP_084995898.1 response regulator transcription factor Regulator
  A6E92_RS23605 (A6E92_23195) - 5543331..5544677 (-) 1347 WP_084995899.1 sensor histidine kinase -
  A6E92_RS23610 (A6E92_23200) - 5544883..5545749 (-) 867 WP_028415387.1 DUF4429 domain-containing protein -
  A6E92_RS23615 (A6E92_23205) - 5545836..5547044 (-) 1209 WP_084995900.1 alpha/beta hydrolase -
  A6E92_RS23620 (A6E92_23210) - 5547187..5547891 (-) 705 WP_084995901.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24494.26 Da        Isoelectric Point: 5.3504

>NTDB_id=153469 A6E92_RS23600 WP_084995898.1 5542645..5543334(-) (vraR) [Streptomyces sp. S8]
MTIRVIIVDDQAMVRAGFAALLSAQGDIDVVGEAADGRQGVEVSRHQHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHR
PKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPAGVTRGRQALRLN
GLTPRESEVLELIARGLSNQEIAERLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLVTPGDAAP

Nucleotide


Download         Length: 690 bp        

>NTDB_id=153469 A6E92_RS23600 WP_084995898.1 5542645..5543334(-) (vraR) [Streptomyces sp. S8]
GTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCTGGGTTCGCGGCGCTGCTGTCCGCGCAGGGCGA
CATCGACGTGGTGGGCGAGGCGGCGGACGGCCGGCAGGGCGTGGAGGTCAGCCGTCACCAGCACCCGGACGTGGTCCTGA
TGGACGTCCGGATGCCGGAGATGGACGGACTGGCCGCCGCCCGCGAGCTGTTGAACCCTCCGGTGGGGGTGGTGCACCGG
CCGAAGGTGCTGATGCTGACCACGTTCGACGTGGACGACTATGTGTACGAGGCGCTCCGGGCAGGTGCCTCCGGGTTCCT
GCTGAAGGACGCCCCGCCCGCCGATCTGATCGCGGCGGTACGGGTGGTGGCGGCGGGCGACGCCCTGCTGGCGCCCTCCG
TGACCCGGCGCCTGATCGCGGACTTCGCGGCGCAGCGGCCTGCGGGGGTGACGCGCGGCAGGCAGGCGCTGCGGCTCAAC
GGGCTGACCCCGCGCGAGAGCGAGGTGCTGGAGCTGATCGCCCGGGGCCTGTCGAACCAGGAGATCGCGGAGCGGCTGGT
GCTTGCCGAGCAGACCGTGAAGACGCACATCGGCCGCGTGCTGGCCAAGCTGGACCTGCGGGACCGCGCGCAGGCGGTGA
TCTTCGCGTACGAGTCGGGGCTGGTGACTCCGGGGGACGCGGCGCCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(162-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.088

99.127

0.397
  degU Bacillus subtilis subsp. subtilis str. 168

38.326

99.127

0.38