Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   A6E92_RS18350 Genome accession   NZ_CP015362
Coordinates   4306565..4307986 (-) Length   473 a.a.
NCBI ID   WP_028416142.1    Uniprot ID   A0ABY2P791
Organism   Streptomyces sp. S8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4301565..4312986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E92_RS18330 (A6E92_17995) - 4302126..4302923 (-) 798 WP_084994364.1 SigE family RNA polymerase sigma factor -
  A6E92_RS18335 (A6E92_18000) - 4303082..4304011 (-) 930 WP_206311907.1 A/G-specific adenine glycosylase -
  A6E92_RS18340 (A6E92_18005) - 4304263..4305117 (+) 855 WP_187330495.1 hypothetical protein -
  A6E92_RS18345 (A6E92_18010) disA 4305359..4306483 (-) 1125 WP_028416141.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  A6E92_RS18350 (A6E92_18015) radA/sms 4306565..4307986 (-) 1422 WP_028416142.1 DNA repair protein RadA Machinery gene
  A6E92_RS18355 (A6E92_18020) - 4308175..4310184 (+) 2010 WP_203237965.1 hypothetical protein -
  A6E92_RS18360 (A6E92_18025) - 4310251..4311093 (-) 843 WP_028416144.1 hypothetical protein -
  A6E92_RS18365 (A6E92_18030) - 4311133..4312083 (+) 951 WP_084994375.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49879.02 Da        Isoelectric Point: 8.2591

>NTDB_id=153460 A6E92_RS18350 WP_028416142.1 4306565..4307986(-) (radA/sms) [Streptomyces sp. S8]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIKAISDHLYLAAETDLSAV
LAHLDEVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPSGMKVTEVADMGDALRVLPRRSRQEAPQPRQDENARR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=153460 A6E92_RS18350 WP_028416142.1 4306565..4307986(-) (radA/sms) [Streptomyces sp. S8]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACCACCGCCAAATGGCT
CGGCCGTTGCCCCGAATGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCGCCCGCCGTGCGCACGACCGCCGCCG
GGCGGGTCTCCACCGCCGCGCTGCCGATCGGCCAGGTCGACAGCCGTACGGCCACGGCACGCTCGACCGGCGTCGGGGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCGGGGGCCGTCGTGCTGCTGGCCGGTGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCCAGCC
AGGTCCGGCTGAGGGCCGACCGGATCAAGGCGATCAGCGACCACCTCTACCTCGCGGCGGAGACCGATCTCTCGGCGGTG
CTCGCGCATCTGGACGAGGTCAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCGTCCAAGGAGCGCGGGATGGCCACGC
TGCTCGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCGCGGCTCCGCCTGGTGCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGCCTCTTCCTGACCCGGCGCGACGTCGCCGTCC
CGGGCACCTGCCTCACGGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCGGAGGTGCAGGCGCTCACGGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCACCGAGCCCGCCGCCGACC
TCGCGGTCGCGCTGGCGCTGGCCAGCGCCGCCAGTGACACCCCGCTCCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGAAGGGTCACCGGGGTGCAGCGGCGGCTGGCGGAGGCCCACCGCCTCGGCTTCACCCACGCCCT
GGTGCCGACCGACCCGGGGCGGGTTCCTTCGGGTATGAAGGTCACAGAAGTCGCCGACATGGGGGATGCTCTGCGGGTCC
TCCCACGCCGGTCTCGTCAGGAGGCGCCGCAGCCTCGTCAGGATGAAAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

95.772

0.416
  radA Streptococcus pneumoniae Rx1

44.755

90.698

0.406
  radA Streptococcus pneumoniae D39

44.755

90.698

0.406
  radA Streptococcus pneumoniae R6

44.755

90.698

0.406
  radA Streptococcus pneumoniae TIGR4

44.755

90.698

0.406
  radA Streptococcus mitis SK321

44.755

90.698

0.406
  radA Streptococcus mitis NCTC 12261

44.522

90.698

0.404

Multiple sequence alignment