Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AKO65_RS15665 Genome accession   NZ_CP012329
Coordinates   3105007..3105909 (-) Length   300 a.a.
NCBI ID   WP_008344822.1    Uniprot ID   A0AB39JAQ8
Organism   Bacillus altitudinis strain NJ-M2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3100007..3110909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO65_RS15650 (AKO65_15660) xerC 3100382..3101299 (-) 918 WP_007499616.1 tyrosine recombinase XerC -
  AKO65_RS15655 (AKO65_15665) trmFO 3101362..3102666 (-) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AKO65_RS15660 (AKO65_15670) topA 3102737..3104812 (-) 2076 WP_008344821.1 type I DNA topoisomerase -
  AKO65_RS15665 (AKO65_15675) dprA 3105007..3105909 (-) 903 WP_008344822.1 DNA-processing protein DprA Machinery gene
  AKO65_RS15670 (AKO65_15680) sucD 3105973..3106875 (-) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  AKO65_RS15675 (AKO65_15685) sucC 3106898..3108058 (-) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  AKO65_RS15680 (AKO65_15690) - 3108235..3108510 (-) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  AKO65_RS15685 (AKO65_15695) - 3108507..3110240 (-) 1734 WP_057079563.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34073.43 Da        Isoelectric Point: 8.2776

>NTDB_id=153452 AKO65_RS15665 WP_008344822.1 3105007..3105909(-) (dprA) [Bacillus altitudinis strain NJ-M2]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPTSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=153452 AKO65_RS15665 WP_008344822.1 3105007..3105909(-) (dprA) [Bacillus altitudinis strain NJ-M2]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCAACCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGTTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTTCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGCGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38
  dprA Legionella pneumophila strain ERS1305867

37.049

100

0.377

Multiple sequence alignment