Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ADU73_RS04650 Genome accession   NZ_CP012294
Coordinates   966073..966624 (+) Length   183 a.a.
NCBI ID   WP_046872029.1    Uniprot ID   -
Organism   Pediococcus damnosus strain TMW 2.1536     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 961073..971624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADU73_RS04640 (ADU73_0904) gyrA 963063..965558 (+) 2496 WP_062913455.1 DNA gyrase subunit A -
  ADU73_RS04645 (ADU73_0905) rpsF 965744..966034 (+) 291 WP_046872028.1 30S ribosomal protein S6 -
  ADU73_RS04650 (ADU73_0906) ssb 966073..966624 (+) 552 WP_046872029.1 single-stranded DNA-binding protein Machinery gene
  ADU73_RS04655 (ADU73_0907) rpsR 966649..966891 (+) 243 WP_046872030.1 30S ribosomal protein S18 -
  ADU73_RS04660 (ADU73_0908) - 967150..967830 (+) 681 WP_046872031.1 EAL domain-containing protein -
  ADU73_RS04665 (ADU73_0909) - 967860..968279 (+) 420 Protein_914 NAD(P)/FAD-dependent oxidoreductase -
  ADU73_RS04670 (ADU73_0910) - 968396..969763 (+) 1368 WP_046872291.1 ISLre2 family transposase -
  ADU73_RS04675 (ADU73_0911) - 969820..970779 (+) 960 Protein_916 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20040.46 Da        Isoelectric Point: 4.7657

>NTDB_id=153256 ADU73_RS04650 WP_046872029.1 966073..966624(+) (ssb) [Pediococcus damnosus strain TMW 2.1536]
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNSQGEREADFINCVIWRKAAENFSNFTHKGSLIGVDGRIQTR
SYENSQNQRVYVTEVVVENFSLLESRSQSEQRQRQENNSGLHSSAPQSSSANTNPFDAGQGNNNSSSSQSNSNGPASSAS
TNPNDPFANNGEQIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=153256 ADU73_RS04650 WP_046872029.1 966073..966624(+) (ssb) [Pediococcus damnosus strain TMW 2.1536]
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGATCCTGATTTACGATACACCAACAGTGGTGCTGCAGTTGC
AACCTTTACAGTCGCAGTTAATCGGCAGTTTACGAACTCTCAAGGGGAACGTGAAGCTGACTTTATTAACTGTGTCATTT
GGCGAAAAGCCGCAGAAAACTTCTCTAACTTTACCCATAAAGGTTCATTGATTGGGGTTGATGGACGGATTCAAACCCGT
TCATACGAAAATTCACAAAATCAACGAGTATACGTTACCGAAGTTGTTGTTGAAAACTTTTCATTGTTGGAATCCCGATC
TCAGTCCGAGCAGCGTCAACGGCAGGAGAATAACTCGGGACTTCACAGCAGTGCTCCGCAATCATCATCTGCGAATACCA
ATCCGTTTGATGCCGGGCAAGGAAACAACAATAGCAGTAGTAGCCAAAGTAATAGCAATGGTCCTGCTTCTAGTGCAAGT
ACCAACCCGAATGATCCGTTTGCAAATAACGGCGAACAAATTGATATTTCCGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.027

100

0.65
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.738

100

0.557

Multiple sequence alignment