Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ADU72_RS04920 | Genome accession | NZ_CP012288 |
| Coordinates | 1052014..1052565 (-) | Length | 183 a.a. |
| NCBI ID | WP_046872029.1 | Uniprot ID | - |
| Organism | Pediococcus damnosus strain TMW 2.1535 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1037271..1062140 | 1052014..1052565 | within | 0 |
Gene organization within MGE regions
Location: 1037271..1062140
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ADU72_RS04850 (ADU72_1138) | yycF | 1037271..1037972 (-) | 702 | WP_046872131.1 | response regulator YycF | - |
| ADU72_RS04860 (ADU72_1139) | - | 1038593..1039222 (-) | 630 | WP_046872038.1 | LysM peptidoglycan-binding domain-containing protein | - |
| ADU72_RS04865 (ADU72_1140) | - | 1039717..1040085 (+) | 369 | WP_046872037.1 | DUF1304 family protein | - |
| ADU72_RS04870 (ADU72_1141) | - | 1040161..1040706 (-) | 546 | WP_046872036.1 | C40 family peptidase | - |
| ADU72_RS04875 (ADU72_1142) | - | 1040991..1042187 (-) | 1197 | WP_056986206.1 | MDR family MFS transporter | - |
| ADU72_RS04880 (ADU72_1143) | dnaB | 1042302..1043699 (-) | 1398 | WP_056986205.1 | replicative DNA helicase | - |
| ADU72_RS04885 (ADU72_1144) | rplI | 1043800..1044252 (-) | 453 | WP_046872033.1 | 50S ribosomal protein L9 | - |
| ADU72_RS04890 (ADU72_1145) | - | 1044258..1046282 (-) | 2025 | WP_046872032.1 | DHH family phosphoesterase | - |
| ADU72_RS04895 (ADU72_1146) | - | 1046704..1047891 (+) | 1188 | WP_062903963.1 | MFS transporter | - |
| ADU72_RS04900 (ADU72_1147) | - | 1047959..1049320 (-) | 1362 | WP_062904517.1 | FAD-dependent oxidoreductase | - |
| ADU72_RS04905 (ADU72_1148) | - | 1049350..1050030 (-) | 681 | WP_046872031.1 | EAL domain-containing protein | - |
| ADU72_RS04910 (ADU72_1149) | - | 1050384..1051625 (+) | 1242 | WP_062916623.1 | ISL3 family transposase | - |
| ADU72_RS04915 (ADU72_1150) | rpsR | 1051747..1051989 (-) | 243 | WP_046872030.1 | 30S ribosomal protein S18 | - |
| ADU72_RS04920 (ADU72_1151) | ssb | 1052014..1052565 (-) | 552 | WP_046872029.1 | single-stranded DNA-binding protein | Machinery gene |
| ADU72_RS04925 (ADU72_1152) | rpsF | 1052604..1052894 (-) | 291 | WP_046872028.1 | 30S ribosomal protein S6 | - |
| ADU72_RS04930 (ADU72_1153) | - | 1053174..1054445 (+) | 1272 | WP_035181568.1 | ISL3 family transposase | - |
| ADU72_RS04935 (ADU72_1154) | gyrA | 1054551..1057046 (-) | 2496 | WP_056986188.1 | DNA gyrase subunit A | - |
| ADU72_RS04940 (ADU72_1155) | gyrB | 1057127..1059106 (-) | 1980 | WP_056986183.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| ADU72_RS04945 (ADU72_1156) | recF | 1059334..1060452 (-) | 1119 | WP_046870946.1 | DNA replication/repair protein RecF | - |
| ADU72_RS04950 (ADU72_1157) | yaaA | 1060455..1060685 (-) | 231 | WP_046870947.1 | S4 domain-containing protein YaaA | - |
| ADU72_RS04955 (ADU72_1158) | dnaN | 1061001..1062140 (-) | 1140 | WP_062904516.1 | DNA polymerase III subunit beta | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20040.46 Da Isoelectric Point: 4.7657
>NTDB_id=153226 ADU72_RS04920 WP_046872029.1 1052014..1052565(-) (ssb) [Pediococcus damnosus strain TMW 2.1535]
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNSQGEREADFINCVIWRKAAENFSNFTHKGSLIGVDGRIQTR
SYENSQNQRVYVTEVVVENFSLLESRSQSEQRQRQENNSGLHSSAPQSSSANTNPFDAGQGNNNSSSSQSNSNGPASSAS
TNPNDPFANNGEQIDISDDDLPF
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNSQGEREADFINCVIWRKAAENFSNFTHKGSLIGVDGRIQTR
SYENSQNQRVYVTEVVVENFSLLESRSQSEQRQRQENNSGLHSSAPQSSSANTNPFDAGQGNNNSSSSQSNSNGPASSAS
TNPNDPFANNGEQIDISDDDLPF
Nucleotide
Download Length: 552 bp
>NTDB_id=153226 ADU72_RS04920 WP_046872029.1 1052014..1052565(-) (ssb) [Pediococcus damnosus strain TMW 2.1535]
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGATCCTGATTTACGATACACCAACAGTGGTGCTGCAGTTGC
AACCTTTACAGTCGCAGTTAATCGGCAGTTTACGAACTCTCAAGGGGAACGTGAAGCTGACTTTATTAACTGTGTCATTT
GGCGAAAAGCCGCAGAAAACTTCTCTAACTTTACCCATAAAGGTTCATTGATTGGGGTTGATGGACGGATTCAAACCCGT
TCATACGAAAATTCACAAAATCAACGAGTATACGTTACCGAAGTTGTTGTTGAAAACTTTTCATTGTTGGAATCCCGATC
TCAGTCCGAGCAGCGTCAACGGCAGGAGAATAACTCGGGACTTCACAGCAGTGCTCCGCAATCATCATCTGCGAATACCA
ATCCGTTTGATGCCGGGCAAGGAAACAACAATAGCAGTAGTAGCCAAAGTAATAGCAATGGTCCTGCTTCTAGTGCAAGT
ACCAACCCGAATGATCCGTTTGCAAATAACGGCGAACAAATTGATATTTCCGACGATGATTTACCATTCTAA
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGATCCTGATTTACGATACACCAACAGTGGTGCTGCAGTTGC
AACCTTTACAGTCGCAGTTAATCGGCAGTTTACGAACTCTCAAGGGGAACGTGAAGCTGACTTTATTAACTGTGTCATTT
GGCGAAAAGCCGCAGAAAACTTCTCTAACTTTACCCATAAAGGTTCATTGATTGGGGTTGATGGACGGATTCAAACCCGT
TCATACGAAAATTCACAAAATCAACGAGTATACGTTACCGAAGTTGTTGTTGAAAACTTTTCATTGTTGGAATCCCGATC
TCAGTCCGAGCAGCGTCAACGGCAGGAGAATAACTCGGGACTTCACAGCAGTGCTCCGCAATCATCATCTGCGAATACCA
ATCCGTTTGATGCCGGGCAAGGAAACAACAATAGCAGTAGTAGCCAAAGTAATAGCAATGGTCCTGCTTCTAGTGCAAGT
ACCAACCCGAATGATCCGTTTGCAAATAACGGCGAACAAATTGATATTTCCGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
65.027 |
100 |
0.65 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.738 |
100 |
0.557 |