Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ADU71_RS04350 Genome accession   NZ_CP012283
Coordinates   925702..926253 (-) Length   183 a.a.
NCBI ID   WP_062903966.1    Uniprot ID   -
Organism   Pediococcus damnosus strain TMW 2.1534     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 920702..931253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADU71_RS04330 (ADU71_0913) - 921836..923023 (+) 1188 WP_062903963.1 MFS transporter -
  ADU71_RS04335 (ADU71_0914) - 923091..924452 (-) 1362 WP_062903964.1 FAD-dependent oxidoreductase -
  ADU71_RS04340 (ADU71_0915) - 924482..925177 (-) 696 WP_062903965.1 EAL domain-containing protein -
  ADU71_RS04345 (ADU71_0916) rpsR 925435..925677 (-) 243 WP_046872030.1 30S ribosomal protein S18 -
  ADU71_RS04350 (ADU71_0917) ssb 925702..926253 (-) 552 WP_062903966.1 single-stranded DNA-binding protein Machinery gene
  ADU71_RS04355 (ADU71_0918) rpsF 926292..926582 (-) 291 WP_046872028.1 30S ribosomal protein S6 -
  ADU71_RS04360 (ADU71_0919) - 926777..928144 (-) 1368 WP_046872291.1 ISLre2 family transposase -
  ADU71_RS04365 (ADU71_0920) gyrA 928326..930821 (-) 2496 WP_062909732.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20012.40 Da        Isoelectric Point: 4.6173

>NTDB_id=153202 ADU71_RS04350 WP_062903966.1 925702..926253(-) (ssb) [Pediococcus damnosus strain TMW 2.1534]
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNSQGEREADFINCVIWRKAAENFSNFTHKGSLIGVDGRIQTR
SYENSQNQRVYVTEVVVENFSLLESRSQSEQRQQQENNSGLHSSAPQSSSANTNPFDAGQGNNNSSSSQSNSNGPASSAS
TNPNDPFANNGEQIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=153202 ADU71_RS04350 WP_062903966.1 925702..926253(-) (ssb) [Pediococcus damnosus strain TMW 2.1534]
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGATCCTGATTTACGATACACCAACAGTGGTGCTGCAGTTGC
AACCTTTACAGTCGCAGTTAATCGGCAGTTTACGAACTCTCAAGGGGAACGTGAAGCTGACTTTATTAACTGTGTCATTT
GGCGAAAAGCCGCAGAAAACTTCTCTAACTTTACCCATAAAGGTTCATTGATTGGGGTTGATGGACGGATTCAAACCCGT
TCATACGAAAATTCACAAAATCAACGAGTATACGTTACCGAAGTTGTTGTTGAAAACTTTTCATTGTTGGAATCCCGATC
TCAGTCCGAGCAGCGTCAACAGCAGGAGAATAACTCGGGACTTCACAGCAGTGCTCCGCAATCATCATCTGCGAATACCA
ATCCGTTTGATGCCGGGCAAGGAAACAACAATAGCAGTAGTAGCCAAAGCAATAGCAATGGTCCTGCTTCTAGTGCAAGT
ACCAACCCGAATGATCCGTTTGCAAATAACGGCGAACAAATTGATATTTCCGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.027

100

0.65
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.738

100

0.557

Multiple sequence alignment