Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ADU70_RS06565 Genome accession   NZ_CP012275
Coordinates   1402351..1402902 (+) Length   183 a.a.
NCBI ID   WP_046872029.1    Uniprot ID   -
Organism   Pediococcus damnosus strain TMW 2.1533     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1397351..1407902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADU70_RS06555 (ADU70_1544) gyrA 1399341..1401836 (+) 2496 WP_056986188.1 DNA gyrase subunit A -
  ADU70_RS06560 (ADU70_1545) rpsF 1402022..1402312 (+) 291 WP_046872028.1 30S ribosomal protein S6 -
  ADU70_RS06565 (ADU70_1546) ssb 1402351..1402902 (+) 552 WP_046872029.1 single-stranded DNA-binding protein Machinery gene
  ADU70_RS06570 (ADU70_1547) rpsR 1402927..1403169 (+) 243 WP_046872030.1 30S ribosomal protein S18 -
  ADU70_RS06575 (ADU70_1548) - 1403428..1404108 (+) 681 WP_046872031.1 EAL domain-containing protein -
  ADU70_RS06580 (ADU70_1549) - 1404138..1405499 (+) 1362 WP_062904517.1 FAD-dependent oxidoreductase -
  ADU70_RS06585 (ADU70_1550) - 1405567..1406754 (-) 1188 WP_062903963.1 MFS transporter -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20040.46 Da        Isoelectric Point: 4.7657

>NTDB_id=153181 ADU70_RS06565 WP_046872029.1 1402351..1402902(+) (ssb) [Pediococcus damnosus strain TMW 2.1533]
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNSQGEREADFINCVIWRKAAENFSNFTHKGSLIGVDGRIQTR
SYENSQNQRVYVTEVVVENFSLLESRSQSEQRQRQENNSGLHSSAPQSSSANTNPFDAGQGNNNSSSSQSNSNGPASSAS
TNPNDPFANNGEQIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=153181 ADU70_RS06565 WP_046872029.1 1402351..1402902(+) (ssb) [Pediococcus damnosus strain TMW 2.1533]
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGATCCTGATTTACGATACACCAACAGTGGTGCTGCAGTTGC
AACCTTTACAGTCGCAGTTAATCGGCAGTTTACGAACTCTCAAGGGGAACGTGAAGCTGACTTTATTAACTGTGTCATTT
GGCGAAAAGCCGCAGAAAACTTCTCTAACTTTACCCATAAAGGTTCATTGATTGGGGTTGATGGACGGATTCAAACCCGT
TCATACGAAAATTCACAAAATCAACGAGTATACGTTACCGAAGTTGTTGTTGAAAACTTTTCATTGTTGGAATCCCGATC
TCAGTCCGAGCAGCGTCAACGGCAGGAGAATAACTCGGGACTTCACAGCAGTGCTCCGCAATCATCATCTGCGAATACCA
ATCCGTTTGATGCCGGGCAAGGAAACAACAATAGCAGTAGTAGCCAAAGTAATAGCAATGGTCCTGCTTCTAGTGCAAGT
ACCAACCCGAATGATCCGTTTGCAAATAACGGCGAACAAATTGATATTTCCGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.027

100

0.65
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.738

100

0.557

Multiple sequence alignment