Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ADU70_RS00350 Genome accession   NZ_CP012275
Coordinates   56520..58322 (+) Length   600 a.a.
NCBI ID   WP_046871795.1    Uniprot ID   -
Organism   Pediococcus damnosus strain TMW 2.1533     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 51520..63322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADU70_RS00325 (ADU70_0333) - 52209..52718 (-) 510 WP_056986581.1 hypothetical protein -
  ADU70_RS00330 (ADU70_0334) - 52946..53686 (+) 741 WP_046871792.1 MBL fold metallo-hydrolase -
  ADU70_RS00335 (ADU70_0335) spxA 54018..54416 (+) 399 WP_056986056.1 transcriptional regulator SpxA -
  ADU70_RS00340 (ADU70_0336) - 54542..55258 (+) 717 WP_062904387.1 adaptor protein MecA -
  ADU70_RS00345 (ADU70_0337) - 55345..56475 (+) 1131 WP_080945547.1 competence protein CoiA -
  ADU70_RS00350 (ADU70_0338) pepF 56520..58322 (+) 1803 WP_046871795.1 oligoendopeptidase F Regulator
  ADU70_RS00355 (ADU70_0339) - 58400..59014 (-) 615 WP_046871796.1 DsbA family protein -
  ADU70_RS00360 (ADU70_0340) - 59289..59939 (+) 651 WP_046871797.1 GTP pyrophosphokinase -
  ADU70_RS00365 (ADU70_0341) - 59946..60752 (+) 807 WP_046871798.1 NAD kinase -
  ADU70_RS00370 (ADU70_0342) - 60742..61647 (+) 906 WP_046871799.1 RluA family pseudouridine synthase -
  ADU70_RS00375 (ADU70_0343) mgtE 61666..63018 (+) 1353 WP_046871800.1 magnesium transporter -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68559.88 Da        Isoelectric Point: 5.0497

>NTDB_id=153164 ADU70_RS00350 WP_046871795.1 56520..58322(+) (pepF) [Pediococcus damnosus strain TMW 2.1533]
MAEIKQLPKRSEVPVALTWDLSTIFKDESALKKAIAQLSPQVDALLESSGNLANNGATLLTAIQSELKIENQLERIYVYA
ELKNDQDTSNNQNQALKDQVNDLVAKVSAKLAWLEPEILAIPKATLANFQNNNADFKPYKHYFDVLNLKRKHVLSTKEEA
ILAGASSIFETSENVFGILDNSDLKFPFVKNTAGETVQLSQGMYSTLLQSTHQSVRKQAFEQLYAVYEQFKNTFATTLAG
EVKVHNFNAQIRGYESARQAAMSESAIPETVYTNLVTEVNQHLDLLHRYVGLRKKILNLKELHMYDLYTPITGKSPLNYT
YLEAQEEAKAALQIMGDDYVSHVDEAFKNRWIDVVENQGKRSGAYSSGVYGTNPFMLLNWQDDLDNLFTLVHEMGHSMHS
YYTTHNQPYQYGDYPIFVAEIASTTNENILTQYLLDKYDDPQIKLFVLNHYLDDFKGTVYRQTQFAEFEQFIHEADARGE
ALTAEMMSDYYGKLNHRYYGDDVVNDSQIKSEWTRIPHFYYNFYVYQYATGFAAASALAKGITTHQPHAKDNYLTYLKSG
SSDFPLDVMKRAGVDMSQKQYLEDAFDVFEQRLNEFENLL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=153164 ADU70_RS00350 WP_046871795.1 56520..58322(+) (pepF) [Pediococcus damnosus strain TMW 2.1533]
ATGGCAGAGATCAAGCAATTACCTAAACGTAGCGAAGTTCCAGTTGCATTGACATGGGATCTTTCAACAATTTTCAAAGA
TGAATCAGCGCTAAAAAAAGCGATCGCACAATTGTCTCCACAAGTCGATGCTTTACTGGAATCGTCTGGAAATTTAGCAA
ACAACGGAGCGACTTTGTTAACAGCAATACAAAGTGAGCTTAAAATTGAAAATCAATTGGAACGTATTTATGTTTATGCG
GAGTTAAAGAATGATCAAGACACGTCAAATAATCAGAATCAGGCGCTTAAAGATCAAGTAAATGATTTAGTGGCCAAGGT
ATCTGCAAAGCTAGCGTGGTTAGAACCTGAAATTTTAGCGATTCCTAAGGCTACATTGGCAAATTTTCAAAATAATAATG
CTGATTTTAAGCCCTATAAGCATTATTTCGACGTTCTTAATTTAAAAAGAAAGCACGTTCTTTCTACCAAAGAGGAAGCA
ATTTTGGCTGGTGCGAGTTCCATTTTCGAGACATCTGAGAATGTATTTGGAATTTTGGACAATTCAGATCTTAAATTTCC
ATTTGTGAAAAATACAGCTGGAGAAACCGTTCAGCTGTCTCAGGGAATGTATTCCACACTTTTACAATCTACTCATCAAT
CTGTGCGTAAACAAGCTTTCGAACAGCTCTATGCGGTGTATGAACAATTTAAAAATACTTTCGCAACGACATTAGCTGGA
GAGGTTAAGGTTCATAATTTTAATGCGCAAATCAGAGGTTATGAGAGTGCACGTCAGGCGGCAATGAGCGAAAGCGCGAT
TCCTGAAACAGTTTATACGAATTTGGTAACTGAGGTAAATCAGCATTTAGATTTGCTGCATCGCTATGTTGGATTGAGAA
AGAAAATTCTTAATTTAAAAGAATTACATATGTATGATTTATATACACCAATTACTGGAAAATCGCCCCTCAATTACACA
TATTTGGAAGCTCAAGAAGAAGCAAAGGCTGCCCTTCAAATCATGGGTGATGATTATGTAAGTCATGTTGATGAAGCTTT
CAAGAATCGCTGGATCGACGTTGTTGAAAACCAAGGGAAACGAAGTGGGGCGTATTCTTCTGGTGTCTATGGAACAAATC
CATTTATGTTGTTGAATTGGCAAGATGATTTGGACAATTTATTCACATTGGTTCATGAAATGGGGCATAGTATGCACAGC
TATTACACGACGCATAATCAACCCTATCAATATGGTGATTATCCAATTTTTGTTGCTGAAATTGCATCGACAACTAATGA
AAATATTTTAACTCAATATTTATTGGATAAATATGATGATCCTCAAATTAAACTGTTTGTTTTGAATCATTATTTGGATG
ATTTCAAGGGGACCGTTTATCGACAAACACAATTCGCTGAATTTGAACAATTTATTCATGAAGCAGACGCCCGTGGGGAA
GCCTTGACTGCAGAAATGATGTCCGACTACTACGGAAAATTAAACCATCGATATTACGGTGACGATGTTGTTAATGATTC
CCAAATAAAGTCAGAATGGACTAGGATTCCTCATTTTTATTACAATTTTTATGTGTATCAATACGCAACAGGTTTTGCAG
CGGCTTCGGCCTTGGCTAAGGGCATTACAACTCATCAACCACATGCAAAAGATAACTATTTGACGTATTTGAAATCAGGA
AGCTCAGATTTTCCCTTAGATGTGATGAAGAGGGCAGGAGTCGATATGTCACAGAAGCAATATTTAGAGGATGCTTTTGA
TGTATTTGAACAGCGTTTAAACGAATTTGAAAATTTATTGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.085

98.5

0.493

Multiple sequence alignment