Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   NX99_RS08415 Genome accession   NZ_CP015282
Coordinates   1806881..1810201 (+) Length   1106 a.a.
NCBI ID   WP_084915320.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1801881..1815201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS08400 (NX99_08255) - 1801895..1803634 (+) 1740 WP_084915315.1 DUF6287 domain-containing protein -
  NX99_RS08405 (NX99_08260) - 1803915..1805225 (+) 1311 WP_084915317.1 hypothetical protein -
  NX99_RS08410 (NX99_08265) - 1805259..1806632 (+) 1374 WP_022495868.1 GHKL domain-containing protein -
  NX99_RS08415 (NX99_08270) rexB 1806881..1810201 (+) 3321 WP_084915320.1 ATP-dependent nuclease subunit B Machinery gene
  NX99_RS08420 (NX99_08275) rexA 1810191..1813844 (+) 3654 WP_084915322.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  NX99_RS08425 (NX99_08280) - 1814196..1814927 (-) 732 WP_070850150.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126008.27 Da        Isoelectric Point: 4.8425

>NTDB_id=153071 NX99_RS08415 WP_084915320.1 1806881..1810201(+) (rexB) [Streptococcus salivarius strain ATCC 27945]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLLRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDKALGNTVLVIDGFTRFSAEEEALVAHLSDKCHQIVIGTYASQKAYRANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFARISRLLESRHDFSTIDEQLTAQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNALRSQLVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSQM
ASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEDRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLSLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWSVAVRYLRKRLDKDQVLIPN
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFELLYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLAQFGLDKLAAQAHK
ELTYKGLFVASETEHLTGGNYDLQKTVTYDKEDLETLLDYNIKLFTSAAEVIRSGNFAVNPYTEDGKSVQGDQIKSITHF
EADRHMGQARKLLRLPSKGKKEAYLELMAKDEEDNQMQVAEKAIPFLVTDQAVTADKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=153071 NX99_RS08415 WP_084915320.1 1806881..1810201(+) (rexB) [Streptococcus salivarius strain ATCC 27945]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCAACCAGCTATGCTCAAAAGGG
AAAGAGGGTATTTTATATTGCCCCTAATGCCCTGTCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CATCCTTTGAGATTACGGTGACTCGTTTTACTCAGATGGCGAGATACTTTATTCTCAATACGAGCAACCCCAAAACGCAG
CTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTGTTGTCGCATATGGGTGATGATGAGCTCAAGGTTTATGGCCG
TTTGCGCAAGGATAGTAACTTTATTAATCAATTGGTAGACCTTTATAAAGAGTTGCAGCAGGCTAATATGACGGTTCTGG
ATTTGCAGCATTTGGATCAGGTTGAAAAACAAGAGGATTTGCTCAGGATTTTCAGTGCGGCTCAGGATCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAACTTAGTGCCTTCTTCAAGGAAATTACCTCAGGACATCTGGATAAGGCACTGGGTAA
CACGGTTTTGGTCATTGATGGCTTTACGCGTTTCTCTGCCGAGGAGGAGGCCCTAGTTGCCCACTTGAGTGATAAGTGCC
ACCAAATTGTCATTGGGACTTATGCTAGTCAAAAGGCTTATAGGGCTAATTTTGTCTATGGCAATGTTTATCAAGCTTCA
GTGGATTTTCTGAGAACTCTGGCTCAGACCTATAAGGTGACACCCGACTATGTGACGACAGACAAAGAGGGGAATCCTTC
TTTTGCACGTATTAGCCGTCTTTTGGAGAGCCGTCATGATTTTAGTACGATTGACGAACAGCTGACTGCTCAGGACAAGC
AAGCTTTGCAGGTTTGGGAAGTGGTCAACCAAAAGGAAGAAGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTAGCA
GATGGCAAGCGCTATAAGGATATCTTGGTCCTGCTTGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGGCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGTAAGGAAGAAACCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCGCTGG
AACGTATCAAGCGCTATAATTATCGTGCTGAGGATTTGCTTAATCTCGTAAAATCCGGTCTCTATGGCGGTTTTGCTCAA
GAGGATTTAGATCTTTTTGAGTATTATGTCAATTTTGCAGACATCAAGGGGCGTCACAAGTTCTTGTCTGATTTTACGGC
CAATAGTCGTGATAAGTATGATTTAGACCAGCTTAATGCCTTGCGCTCACAACTGGTAGAGCCCTTGGACAAGTTGCTTA
ATAGTCGCAAACAAAAGGGTTCTAGTCTACTCAAGAAACTAGTGGTCTTTTTAGAGGCTGTGCAAGTGCCAAGTCAGATG
GCTAGTTTGACTGCCAAGGCCAGTGAGGCCGAAAAAGAACAGAACGAACAGGTCTGGAAGGCTTTCACACAACTCTTGGA
GCAGGTTGAGACTATTTTTGGGGAAGAAACTCTGTCAGTGGACGACTTTTTGTCCATTTTGCGTTCGGGAATGTTGGCCT
GTGATTACCGTACGGTTCCAGCTACTGTCGATGTGGTCAATGTGAAGAAATACGATTTGATTCAACCACACTCTGCTCCT
TATGTTTTTGCCTTGGGGATGACCCAGTCACATTTTCCTAAGGTAGGGCAAAATAAGAGTCTCCTGTCTGACGAGGAACG
TAGTCGTATCAATGAGGCGACGGATGAAGACAGGAGTTTGGATATTGTTACGCAGAGCAATAGTCAGCGGGGGCATTTTG
TGGCTATGTCACTTTTTAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACGCAGGATGAC
ATGTCGGTTTATTTGAAAGAGCTGCTTGACCTTGGTCTTTCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCTAAGGG
TGACCAGATTGGGAACTACAAGGACCTTCTATCAACTGTCATTGCCCTTAACAGTAGCCATCTAGATGCTGATTTGGATA
AGGAAACGCAGACTTTCTGGTCCGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATAAGGACCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACAACCAAGGTGGATGATCAAGTCATGCAGCTAGTCTTTCCGGGGGAAGAACCACTGAAATT
ATCAGCCTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGGGCTTGAAGAGTTGG
AGTCCATTCATCCAGATGCTCGACACCATGGGACTTACTTGCACCGTGTCTTTGAGCGTGTCATGGGTGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAGCCCTTTGAACTTCTCTATACAGAGGA
CCAAGAGAGTCGCTTGTCTCGTCAGATTTTAGAAGATATCGCCCGTTCAACTGCCAGTGTTTTGCGTGATAATGCGGCTG
TTAAGGTTGAGCGTGAGGAAGCCAAGTTTGACTTGCTTTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGTGTG
GACCGTTTAACGGATGGGGCTCTGGGTGTCGTTGACTACAAATCAGGTAAAAATGTCTTTGACATTCAAAAATTCTACAA
TGGCCTTAGTCCGCAATTGGTGACCTATCTAGAAGCCCTTCGCCAGACCTATAAGGTTGATGCTGACCAGCTTTTTGGTG
CCATGTATCTTCACATGCAGGACCCACAACTTAACTTAGCTCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTCATAAG
GAATTAACCTATAAGGGACTTTTTGTGGCTTCAGAAACAGAGCATTTGACTGGTGGAAACTATGATTTGCAAAAGACTGT
CACCTATGACAAGGAGGACCTAGAAACCTTGCTAGACTACAATATCAAGCTCTTTACAAGTGCTGCTGAGGTTATTCGAA
GCGGGAATTTTGCGGTCAATCCTTATACTGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGTCTATTACTCATTTT
GAGGCCGACCGCCACATGGGACAGGCGCGAAAACTCTTGCGTTTACCAAGCAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGGCAAAAGATGAGGAAGATAATCAAATGCAAGTTGCTGAAAAAGCTATCCCCTTTCTTGTCACCGATCAAGCTGTGA
CAGCAGACAAAAAAGACCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.618

98.463

0.429