Detailed information NTG0153048

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: NX99_RS06935
• Genome accession: NZ_CP015282
• Coordinates: 1530939..1532039 (-)
• Length: 366 a.a.
• NCBI ID: WP_084915174.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain ATCC 27945
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1525939..1537039

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NX99_RS06920 (NX99_06790)	trpS	1526452..1527474 (+)	1023	WP_002883969.1	tryptophan--tRNA ligase	-
NX99_RS06925 (NX99_06795)	guaB	1527653..1529134 (+)	1482	WP_013991341.1	IMP dehydrogenase	-
NX99_RS06930 (NX99_06800)	-	1529386..1530588 (+)	1203	WP_037605196.1	IS110 family transposase	-
NX99_RS06935 (NX99_06805)	recF	1530939..1532039 (-)	1101	WP_084915174.1	DNA replication/repair protein RecF	Machinery gene
NX99_RS06940 (NX99_06810)	yaaA	1532042..1532419 (-)	378	WP_014635201.1	S4 domain-containing protein YaaA	-
NX99_RS06945 (NX99_06815)	yfmF	1532497..1533747 (+)	1251	WP_073687255.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
NX99_RS06950 (NX99_06820)	yfmH	1533749..1535026 (+)	1278	WP_084915176.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
NX99_RS06955 (NX99_06825)	-	1535085..1535942 (+)	858	WP_084915177.1	helix-turn-helix domain-containing protein	-
NX99_RS06960 (NX99_06830)	pgsA	1535955..1536497 (+)	543	WP_048676458.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42219.27 Da
• Isoelectric Point: 8.4088

>NTDB_id=153048 NX99_RS06935 WP_084915174.1 1530939..1532039(-) (recF) [Streptococcus salivarius strain ATCC 27945]
MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQFQQNTLKLNGIVHRHSGK
LPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPEDLQLIKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQR
NAYLKSTDNVDINFLSVLDEQLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESSIPLENNKVIRESFLT
TLKQNHKRDIFKKNTGVGPHRDDLTFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTGEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPDLKTFLVKNGNIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=153048 NX99_RS06935 WP_084915174.1 1530939..1532039(-) (recF) [Streptococcus salivarius strain ATCC 27945]
ATGTGGCTCGAAAAAATTGATATTCAACACTTTAGAAATTATACTGAAGCCTCTGTGAGCTTCTCACCTCATCTCAATAT
TTTTCTTGGTCGCAACGCTCAAGGAAAAACAAATATTCTTGAGGCAATCTATTTTCTAGCATTGACACGTAGTCATCGGA
CCCGTTCAGATAAGGAACTGATTCAATTTCAGCAAAATACTCTCAAACTGAACGGCATTGTGCATCGTCATAGTGGGAAG
CTACCTCTGGAAATCAGTTTATCTAATAAAGGACGCATAACAAAGGTCAACCATCTCAAACAAGCTAAATTATCCGATTA
TATCGGTCACATGACGGTGGTGCTCTTTGCTCCTGAGGATTTACAACTTATAAAAGGATCTCCAAGCCTAAGGCGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTATCTCTCAGACCTATCAAGTTATAATCATGTACTCAAACAACGT
AATGCCTATCTCAAATCTACTGACAATGTAGACATTAATTTCCTCTCAGTATTAGATGAACAGCTTTCCGATTTTGGAAC
ACGAGTTATCGAACATAGACTAGAATTTATCAAGCAATTAGAGGAGGAGGCAGATAGACATCATAGTAACCTCTCAAATC
AGATAGAGCGTCTTAAAATCTCCTACGAATCTAGTATCCCACTGGAAAATAACAAAGTTATTCGCGAATCATTTTTAACC
ACGTTAAAGCAAAATCACAAAAGAGATATCTTCAAAAAGAACACTGGTGTTGGTCCACATAGGGATGATTTGACATTTTA
CATCAATGACATGAACGCATCTTTCGGTAGTCAGGGGCAGCAACGTAGCCTCATTCTTTCTTTAAAAATGGCTGAGATTG
CTCTGATAAAAAAAGTAACAGGTGAATTTCCTATTCTTCTCCTCGATGATGTCATGAGTGAGCTTGACAACCACCGTCAA
CTTAAACTGTTAGAAAGTATTGACGAAGAGGTTCAAACCTTCATGACGACAACTTCACTTGATCATCTGAGTAACCTACC
ACCTGATTTAAAGACCTTCTTAGTTAAGAATGGTAATATTTATGAAAAACAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-343)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	43.631	100	0.44