Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NX99_RS04560 Genome accession   NZ_CP015282
Coordinates   1062291..1064276 (-) Length   661 a.a.
NCBI ID   WP_084914921.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1057291..1069276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS04530 (NX99_04450) rsmI 1058489..1059355 (-) 867 WP_002890224.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NX99_RS04535 (NX99_04455) yabA 1059358..1059678 (-) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  NX99_RS04540 (NX99_04460) yaaT 1059665..1060471 (-) 807 WP_037599638.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  NX99_RS04545 (NX99_04465) - 1060468..1061343 (-) 876 WP_084914920.1 DNA polymerase III subunit delta' -
  NX99_RS04550 (NX99_04470) tmk 1061352..1061981 (-) 630 WP_073689633.1 dTMP kinase -
  NX99_RS04560 (NX99_04480) recP/tkt 1062291..1064276 (-) 1986 WP_084914921.1 transketolase Machinery gene
  NX99_RS04565 (NX99_04485) tpiA 1064538..1065296 (-) 759 WP_002890214.1 triose-phosphate isomerase -
  NX99_RS04570 (NX99_04490) tuf 1065550..1066746 (-) 1197 WP_002890213.1 elongation factor Tu -
  NX99_RS04575 (NX99_04495) ftsW 1066983..1068263 (-) 1281 WP_037599630.1 cell division peptidoglycan polymerase FtsW -
  NX99_RS04580 (NX99_04500) - 1068521..1068937 (-) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70890.65 Da        Isoelectric Point: 4.8434

>NTDB_id=153015 NX99_RS04560 WP_084914921.1 1062291..1064276(-) (recP/tkt) [Streptococcus salivarius strain ATCC 27945]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKVETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
TAYPELAAEYKAAFANEPVHVNLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQAANYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNVAWKRALAETERPTMLVLTRQNLPVLDGTAENAETGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=153015 NX99_RS04560 WP_084914921.1 1062291..1064276(-) (recP/tkt) [Streptococcus salivarius strain ATCC 27945]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTCAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCTGGTCATGGTTCTGCCTTGCTTTATAGTCTATTGCAC
CTTTCTGGCTATGATGTGACAATGGACGACTTGAAGAATTTCCGTCAATGGGGCTCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGCGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCCAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTGCTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCAACTTCAATGGCTTTCACAGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCCATCGAAGAAGCTAAGGTTGAGACAGAT
AAACCATCTATCATTGAAGTTAAGACAATCATTGGTTATGGAGCTGAAGGGCAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGATGGCATTGATCACGCAAAAGGTGTTTATGGTTATGATGCACCGGCATTTACAGTTCCAGATGAAGTTG
CTCGTCGTTTCGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
ACTGCTTACCCAGAATTGGCTGCTGAATACAAGGCTGCCTTTGCAAATGAACCTGTACACGTTAACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTATCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGCTAACTATGCTGGA
CGTAATATTTGGTTTGGTGTACGTGAGTTTGCTATGGCAGCAGCTATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCACTTCAAAACTTGCCAGTAA
CTTATGTTATGACTCACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGTTGCATGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTCTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACAGCTGAAAATGCTGAAACTG
GTGTCAATAAAGGGGCTTACATCATCTCAGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACTGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAAGCAGCTCTTGAAGCTGAAGGCGTGCATGTCCGTGTTGTTTCGATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAGGTCCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGTAAATATGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.535

99.546

0.563