Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AEI04_RS02820 Genome accession   NZ_CP012244
Coordinates   524799..525572 (+) Length   257 a.a.
NCBI ID   WP_002872370.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ509CC45     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 519799..530572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI04_RS02805 (AEI04_02815) - 520648..522582 (-) 1935 WP_057036441.1 RNB domain-containing ribonuclease -
  AEI04_RS02810 (AEI04_02820) ilvC 522701..523723 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  AEI04_RS02815 (AEI04_02825) - 523727..524809 (+) 1083 WP_002852295.1 divergent polysaccharide deacetylase family protein -
  AEI04_RS02820 (AEI04_02830) dprA 524799..525572 (+) 774 WP_002872370.1 DNA-processing protein DprA Machinery gene
  AEI04_RS02825 (AEI04_02835) ruvX 525569..525952 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  AEI04_RS02830 (AEI04_02840) - 525981..526820 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI04_RS02835 (AEI04_02845) msrA 526996..527493 (-) 498 WP_052776067.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI04_RS02840 (AEI04_02850) ppa 527534..528052 (-) 519 WP_002855031.1 inorganic diphosphatase -
  AEI04_RS02845 (AEI04_02855) adk 528062..528640 (-) 579 WP_002855137.1 adenylate kinase -
  AEI04_RS02850 (AEI04_02860) aspS 528637..530388 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28724.54 Da        Isoelectric Point: 7.6510

>NTDB_id=152935 AEI04_RS02820 WP_002872370.1 524799..525572(+) (dprA) [Campylobacter jejuni strain CJ509CC45]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SVAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=152935 AEI04_RS02820 WP_002872370.1 524799..525572(+) (dprA) [Campylobacter jejuni strain CJ509CC45]
ATGGCAAGTGAAATTTTGCCTGATGAATTTCTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTGGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGTGGTGCTTTGGGTGTGGATATCACCGCA
AGTGTGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTAGTTGCGCAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment