Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   AEI25_RS04045 Genome accession   NZ_CP012242
Coordinates   763015..763668 (-) Length   217 a.a.
NCBI ID   WP_260628411.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ055CCUA     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 751374..769674 763015..763668 within 0


Gene organization within MGE regions


Location: 751374..769674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI25_RS03930 (AEI25_03935) - 751374..752573 (+) 1200 WP_260628403.1 tyrosine-type recombinase/integrase -
  AEI25_RS08610 - 752500..752739 (-) 240 WP_002861629.1 helix-turn-helix domain-containing protein -
  AEI25_RS03935 (AEI25_03940) - 752732..753274 (-) 543 WP_260628404.1 pentapeptide repeat-containing protein -
  AEI25_RS03940 (AEI25_03945) - 753262..753462 (-) 201 WP_260628405.1 hypothetical protein -
  AEI25_RS03945 (AEI25_03950) - 753503..753922 (-) 420 WP_059111112.1 YopX family protein -
  AEI25_RS03950 (AEI25_03955) - 753926..754624 (-) 699 WP_059111113.1 antA/AntB antirepressor family protein -
  AEI25_RS03955 (AEI25_03960) - 754798..755193 (-) 396 WP_059111114.1 hypothetical protein -
  AEI25_RS03960 (AEI25_03965) - 755206..755478 (-) 273 WP_059111115.1 hypothetical protein -
  AEI25_RS03965 (AEI25_03970) - 755471..755794 (-) 324 WP_059111116.1 hypothetical protein -
  AEI25_RS03970 (AEI25_03975) - 755858..756745 (-) 888 WP_002896047.1 hypothetical protein -
  AEI25_RS03975 (AEI25_03980) - 756791..757543 (-) 753 WP_059111117.1 DNA-methyltransferase -
  AEI25_RS03980 (AEI25_03985) - 757545..757802 (-) 258 WP_059111150.1 hypothetical protein -
  AEI25_RS03985 (AEI25_03990) - 757783..758478 (-) 696 WP_011049696.1 hypothetical protein -
  AEI25_RS03990 (AEI25_03995) - 758478..759215 (-) 738 WP_107840713.1 hypothetical protein -
  AEI25_RS03995 (AEI25_04000) - 759212..760072 (-) 861 WP_260628406.1 lambda-exonuclease family protein -
  AEI25_RS04000 (AEI25_04005) - 760074..760301 (-) 228 WP_260628407.1 helix-turn-helix domain-containing protein -
  AEI25_RS04005 (AEI25_04010) - 760292..760550 (-) 259 Protein_794 hypothetical protein -
  AEI25_RS04010 (AEI25_04015) - 760541..760810 (-) 270 WP_002874357.1 hypothetical protein -
  AEI25_RS04015 (AEI25_04020) - 761167..761439 (-) 273 WP_052840134.1 hypothetical protein -
  AEI25_RS04020 - 761490..761639 (+) 150 WP_172670516.1 hypothetical protein -
  AEI25_RS04025 (AEI25_04025) - 761620..761811 (-) 192 WP_052840132.1 hypothetical protein -
  AEI25_RS04030 - 761990..762256 (+) 267 WP_260628408.1 hypothetical protein -
  AEI25_RS04035 - 762265..762426 (+) 162 WP_260628409.1 hypothetical protein -
  AEI25_RS04040 - 762432..762761 (+) 330 WP_260628410.1 hypothetical protein -
  AEI25_RS04045 (AEI25_04035) CJE0566 763015..763668 (-) 654 WP_260628411.1 DNA/RNA non-specific endonuclease Regulator
  AEI25_RS04050 (AEI25_04040) - 763688..764461 (-) 774 WP_002929400.1 hypothetical protein -
  AEI25_RS04055 (AEI25_04045) - 764458..765189 (-) 732 WP_002929403.1 helix-turn-helix transcriptional regulator -
  AEI25_RS04060 (AEI25_04050) - 765330..765545 (+) 216 WP_002925661.1 hypothetical protein -
  AEI25_RS04065 (AEI25_04060) - 765937..766938 (+) 1002 WP_038402068.1 hypothetical protein -
  AEI25_RS04070 (AEI25_04065) - 766949..767449 (+) 501 WP_224027412.1 hypothetical protein -
  AEI25_RS04075 (AEI25_04070) - 767619..767999 (+) 381 WP_002861660.1 hypothetical protein -
  AEI25_RS04080 (AEI25_04075) - 767999..768385 (+) 387 WP_002826748.1 terminase small subunit -
  AEI25_RS04085 (AEI25_04080) - 768382..769674 (+) 1293 WP_038402071.1 terminase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25565.03 Da        Isoelectric Point: 9.6859

>NTDB_id=152886 AEI25_RS04045 WP_260628411.1 763015..763668(-) (CJE0566) [Campylobacter jejuni strain CJ055CCUA]
MKKLILLPLLSTLAFADYTQYKPSEDFAKYFTKQNCSQVLDKFYYLNCYDYNYKGTKAVAYKLEAENLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGSLEVL
NLVNYDSNPQRIRNQIAIPSSYTKILKGENFEECYQVPNHEVDDEGIKKYKVNCDKF

Nucleotide


Download         Length: 654 bp        

>NTDB_id=152886 AEI25_RS04045 WP_260628411.1 763015..763668(-) (CJE0566) [Campylobacter jejuni strain CJ055CCUA]
GTGAAAAAACTCATACTTTTGCCATTGTTATCCACTCTAGCTTTTGCTGATTACACACAATATAAACCGAGTGAAGATTT
TGCAAAGTATTTTACTAAACAAAACTGCTCTCAAGTTTTAGATAAGTTTTATTATCTAAATTGTTATGATTATAATTATA
AAGGCACTAAAGCTGTAGCTTATAAATTAGAAGCGGAAAATTTAAAAGGCGAACAAATTAAAAAACGCCCACGATTTGAA
GATGATACAAATATCCCTAAAAAATATCGCACCACTTGGAGTGATTATAAAAATAGTGGTTATGATAGAGGACACACTCT
TTCTAATGCCTCAATGAGAAAAACAACTCAAGCTCAAAGAAGCACATTCTTAATGAGTAATATTACTCCACAAAATCCAC
AAATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAACTTGGAAGTTTAGAAGTTTTA
AATTTGGTTAATTATGATAGTAATCCACAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTACACTAAGATTTTAAA
AGGCGAGAATTTTGAAGAATGTTATCAAGTGCCAAACCATGAAGTGGATGACGAGGGTATAAAAAAATATAAGGTTAATT
GTGATAAATTTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

93.088

100

0.931
  CJE1441 Campylobacter jejuni RM1221

90.323

100

0.903

Multiple sequence alignment