Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   AEI14_RS07295 Genome accession   NZ_CP012241
Coordinates   1392382..1393563 (-) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni strain CJ065CC48     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387382..1398563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI14_RS07265 (AEI14_07295) - 1387926..1388267 (+) 342 WP_002784057.1 hypothetical protein -
  AEI14_RS07270 (AEI14_07300) flgM 1388330..1388527 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  AEI14_RS07275 (AEI14_07305) - 1388570..1389004 (+) 435 WP_002779263.1 flagellar protein FlgN -
  AEI14_RS07280 (AEI14_07310) flgK 1389014..1390840 (+) 1827 WP_002871863.1 flagellar hook-associated protein FlgK -
  AEI14_RS07285 (AEI14_07315) - 1390857..1391621 (+) 765 WP_002851318.1 TIGR02757 family protein -
  AEI14_RS07290 (AEI14_07320) - 1391625..1392389 (+) 765 WP_002871861.1 TSUP family transporter -
  AEI14_RS07295 (AEI14_07325) ctsF 1392382..1393563 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  AEI14_RS07300 (AEI14_07330) ctsE 1393560..1395119 (-) 1560 WP_032599783.1 GspE/PulE family protein Machinery gene
  AEI14_RS07305 (AEI14_07335) ctsX 1395109..1395696 (-) 588 WP_002851370.1 membrane protein Machinery gene
  AEI14_RS07310 (AEI14_07340) ctsP 1395700..1396308 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI14_RS07315 (AEI14_07345) ctsD 1396301..1397713 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI14_RS07320 ctsR 1397691..1398003 (-) 313 Protein_1436 transformation system protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=152872 AEI14_RS07295 WP_002868229.1 1392382..1393563(-) (ctsF) [Campylobacter jejuni strain CJ065CC48]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=152872 AEI14_RS07295 WP_002868229.1 1392382..1393563(-) (ctsF) [Campylobacter jejuni strain CJ065CC48]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTGTCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAGATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGTTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment