Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A5955_RS13010 Genome accession   NZ_CP015241
Coordinates   2626745..2627221 (-) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain 2013C-4465     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2621745..2632221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5955_RS32415 - 2623446..2623605 (-) 160 Protein_2468 integrase -
  A5955_RS12980 (A5955_12965) - 2623935..2624777 (-) 843 WP_001280497.1 DUF4942 domain-containing protein -
  A5955_RS12985 (A5955_12970) - 2624862..2625059 (-) 198 WP_064032147.1 DUF957 domain-containing protein -
  A5955_RS12990 (A5955_12975) - 2625071..2625559 (-) 489 WP_000761652.1 DUF5983 family protein -
  A5955_RS12995 (A5955_12980) cbtA 2625556..2625932 (-) 377 Protein_2472 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  A5955_RS13000 (A5955_12985) - 2626022..2626387 (-) 366 WP_001443430.1 type IV toxin-antitoxin system YeeU family antitoxin -
  A5955_RS13005 (A5955_12990) - 2626461..2626682 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  A5955_RS13010 (A5955_12995) radC 2626745..2627221 (-) 477 WP_001186192.1 JAB domain-containing protein Machinery gene
  A5955_RS13015 (A5955_13000) - 2627236..2627721 (-) 486 WP_000213700.1 antirestriction protein -
  A5955_RS13020 (A5955_13005) - 2627813..2628631 (-) 819 WP_024230368.1 DUF932 domain-containing protein -
  A5955_RS28630 - 2628749..2628944 (-) 196 Protein_2478 DUF905 family protein -
  A5955_RS13030 (A5955_13015) - 2629015..2631861 (-) 2847 WP_024232375.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=152875 A5955_RS13010 WP_001186192.1 2626745..2627221(-) (radC) [Escherichia coli strain 2013C-4465]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=152875 A5955_RS13010 WP_001186192.1 2626745..2627221(-) (radC) [Escherichia coli strain 2013C-4465]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment