Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   AEI14_RS07310 Genome accession   NZ_CP012241
Coordinates   1395700..1396308 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain CJ065CC48     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1390700..1401308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI14_RS07285 (AEI14_07315) - 1390857..1391621 (+) 765 WP_002851318.1 TIGR02757 family protein -
  AEI14_RS07290 (AEI14_07320) - 1391625..1392389 (+) 765 WP_002871861.1 TSUP family transporter -
  AEI14_RS07295 (AEI14_07325) ctsF 1392382..1393563 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  AEI14_RS07300 (AEI14_07330) ctsE 1393560..1395119 (-) 1560 WP_032599783.1 GspE/PulE family protein Machinery gene
  AEI14_RS07305 (AEI14_07335) ctsX 1395109..1395696 (-) 588 WP_002851370.1 membrane protein Machinery gene
  AEI14_RS07310 (AEI14_07340) ctsP 1395700..1396308 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI14_RS07315 (AEI14_07345) ctsD 1396301..1397713 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI14_RS07320 ctsR 1397691..1398003 (-) 313 Protein_1436 transformation system protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=152875 AEI14_RS07310 WP_002851464.1 1395700..1396308(-) (ctsP) [Campylobacter jejuni strain CJ065CC48]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=152875 AEI14_RS07310 WP_002851464.1 1395700..1396308(-) (ctsP) [Campylobacter jejuni strain CJ065CC48]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment