Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AEI14_RS03235 Genome accession   NZ_CP012241
Coordinates   591080..591853 (+) Length   257 a.a.
NCBI ID   WP_002858613.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ065CC48     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 586080..596853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI14_RS03220 (AEI14_03235) - 586929..588863 (-) 1935 WP_220553012.1 RNB domain-containing ribonuclease -
  AEI14_RS03225 (AEI14_03240) ilvC 588982..590004 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  AEI14_RS03230 (AEI14_03245) - 590008..591090 (+) 1083 WP_002929722.1 divergent polysaccharide deacetylase family protein -
  AEI14_RS03235 (AEI14_03250) dprA 591080..591853 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  AEI14_RS03240 (AEI14_03255) ruvX 591850..592233 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX -
  AEI14_RS03245 (AEI14_03260) - 592262..593101 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI14_RS03250 (AEI14_03265) msrA 593277..593774 (-) 498 WP_002929725.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI14_RS03255 (AEI14_03270) ppa 593815..594333 (-) 519 WP_002852138.1 inorganic diphosphatase -
  AEI14_RS03260 (AEI14_03275) adk 594343..594921 (-) 579 WP_002858481.1 adenylate kinase -
  AEI14_RS03265 (AEI14_03280) aspS 594918..596669 (-) 1752 WP_002871806.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28864.66 Da        Isoelectric Point: 7.0853

>NTDB_id=152858 AEI14_RS03235 WP_002858613.1 591080..591853(+) (dprA) [Campylobacter jejuni strain CJ065CC48]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=152858 AEI14_RS03235 WP_002858613.1 591080..591853(+) (dprA) [Campylobacter jejuni strain CJ065CC48]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAATCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment