Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AEI00_RS02815 Genome accession   NZ_CP012239
Coordinates   535340..536113 (+) Length   257 a.a.
NCBI ID   WP_002898548.1    Uniprot ID   A0A5Y8XRL7
Organism   Campylobacter jejuni strain CJ029CC45     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 530340..541113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI00_RS02800 (AEI00_02815) - 531189..533123 (-) 1935 WP_004309024.1 RNB domain-containing ribonuclease -
  AEI00_RS02805 (AEI00_02820) ilvC 533242..534264 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  AEI00_RS02810 (AEI00_02825) - 534268..535350 (+) 1083 WP_004309026.1 divergent polysaccharide deacetylase family protein -
  AEI00_RS02815 (AEI00_02830) dprA 535340..536113 (+) 774 WP_002898548.1 DNA-processing protein DprA Machinery gene
  AEI00_RS02820 (AEI00_02835) ruvX 536110..536493 (+) 384 WP_002898550.1 Holliday junction resolvase RuvX -
  AEI00_RS02825 (AEI00_02840) - 536522..537361 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI00_RS02830 (AEI00_02845) msrA 537537..538034 (-) 498 WP_002898554.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI00_RS02835 (AEI00_02850) ppa 538075..538593 (-) 519 WP_002852138.1 inorganic diphosphatase -
  AEI00_RS02840 (AEI00_02855) adk 538603..539181 (-) 579 WP_002872374.1 adenylate kinase -
  AEI00_RS02845 (AEI00_02860) aspS 539178..540929 (-) 1752 WP_004309032.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28825.73 Da        Isoelectric Point: 7.6817

>NTDB_id=152830 AEI00_RS02815 WP_002898548.1 535340..536113(+) (dprA) [Campylobacter jejuni strain CJ029CC45]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSIYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELHKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=152830 AEI00_RS02815 WP_002898548.1 535340..536113(+) (dprA) [Campylobacter jejuni strain CJ029CC45]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTATTTATACGAAAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTGGTTGCGCAAGCAGATATAAAAAGTGGTTCCATGCAAAGT
GCAAAACTTGCTTTAGAACTTCATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTACT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATGAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y8XRL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.828

99.611

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment