Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AEI18_RS03125 Genome accession   NZ_CP012237
Coordinates   574492..575265 (+) Length   257 a.a.
NCBI ID   WP_002918419.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ075CC460     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 570341..599098 574492..575265 within 0


Gene organization within MGE regions


Location: 570341..599098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI18_RS03110 (AEI18_03135) - 570341..572275 (-) 1935 WP_002852122.1 RNB domain-containing ribonuclease -
  AEI18_RS03115 (AEI18_03140) ilvC 572394..573416 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  AEI18_RS03120 (AEI18_03145) - 573420..574502 (+) 1083 WP_052800280.1 divergent polysaccharide deacetylase family protein -
  AEI18_RS03125 (AEI18_03150) dprA 574492..575265 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  AEI18_RS03130 (AEI18_03155) ruvX 575262..575645 (+) 384 WP_052800281.1 Holliday junction resolvase RuvX -
  AEI18_RS03135 (AEI18_03160) - 575674..575862 (+) 189 Protein_616 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI18_RS03140 (AEI18_03165) - 576050..576760 (-) 711 WP_002909810.1 XRE family transcriptional regulator -
  AEI18_RS03145 (AEI18_03170) - 576950..577264 (-) 315 WP_002865557.1 hypothetical protein -
  AEI18_RS03150 (AEI18_03175) - 577309..577500 (+) 192 WP_002865558.1 hypothetical protein -
  AEI18_RS03155 (AEI18_03180) - 577501..577920 (+) 420 WP_260629639.1 hypothetical protein -
  AEI18_RS03160 (AEI18_03185) - 577862..578179 (-) 318 WP_260629640.1 phage holin family protein -
  AEI18_RS03165 (AEI18_03190) - 578291..578539 (-) 249 WP_002784496.1 hypothetical protein -
  AEI18_RS03170 (AEI18_03195) - 578536..578877 (-) 342 WP_002854893.1 hypothetical protein -
  AEI18_RS03175 (AEI18_03200) - 578888..579277 (-) 390 WP_021034186.1 YcbK family protein -
  AEI18_RS03180 (AEI18_03205) - 579267..579632 (-) 366 WP_002790266.1 hypothetical protein -
  AEI18_RS03185 (AEI18_03210) - 579629..579982 (-) 354 WP_002790896.1 hypothetical protein -
  AEI18_RS03190 (AEI18_03215) - 579979..580248 (-) 270 WP_019108985.1 hypothetical protein -
  AEI18_RS03195 (AEI18_03220) - 580248..581135 (-) 888 WP_002865845.1 Mu-like prophage major head subunit gpT family protein -
  AEI18_RS03200 (AEI18_03225) - 581135..582175 (-) 1041 WP_002790001.1 phage protease -
  AEI18_RS03205 (AEI18_03230) - 582306..582770 (+) 465 WP_002901330.1 DUF1804 family protein -
  AEI18_RS09885 - 582767..583042 (+) 276 Protein_631 phage baseplate assembly protein V -
  AEI18_RS03210 (AEI18_03235) - 583019..583636 (+) 618 WP_260629692.1 phage baseplate assembly protein V -
  AEI18_RS03215 (AEI18_03240) - 583645..583836 (+) 192 WP_002795238.1 hypothetical protein -
  AEI18_RS03220 (AEI18_03245) - 583833..584123 (+) 291 WP_002795239.1 GPW/gp25 family protein -
  AEI18_RS03225 (AEI18_03250) - 584120..585286 (+) 1167 WP_260629641.1 baseplate J/gp47 family protein -
  AEI18_RS03230 (AEI18_03255) - 585283..585903 (+) 621 WP_260629642.1 phage tail protein I -
  AEI18_RS03235 (AEI18_03260) - 585903..586934 (+) 1032 WP_260629643.1 phage tail protein -
  AEI18_RS03240 (AEI18_03265) - 586959..587465 (+) 507 WP_002878909.1 DUF4376 domain-containing protein -
  AEI18_RS03245 (AEI18_03270) - 587462..587833 (+) 372 WP_002909498.1 DUF1353 domain-containing protein -
  AEI18_RS03250 (AEI18_03275) - 587933..588940 (+) 1008 WP_260629644.1 hypothetical protein -
  AEI18_RS03255 (AEI18_03280) - 588959..590374 (+) 1416 WP_409557667.1 phage tail sheath family protein -
  AEI18_RS03260 (AEI18_03285) - 590521..591036 (+) 516 WP_002865794.1 phage major tail tube protein -
  AEI18_RS03265 (AEI18_03290) - 591047..591283 (+) 237 WP_002789979.1 phage tail assembly protein -
  AEI18_RS03270 (AEI18_03295) - 591391..591621 (-) 231 WP_002789978.1 hypothetical protein -
  AEI18_RS03275 (AEI18_03300) - 591651..593615 (+) 1965 WP_002876455.1 phage tail tape measure protein -
  AEI18_RS03280 (AEI18_03305) - 593617..593991 (+) 375 WP_002870151.1 phage tail protein -
  AEI18_RS03285 (AEI18_03310) - 593984..594175 (+) 192 WP_002789964.1 tail protein X -
  AEI18_RS03290 (AEI18_03315) - 594169..595137 (+) 969 WP_002865687.1 phage late control D family protein -
  AEI18_RS03295 - 595185..595373 (+) 189 Protein_649 DNA adenine methylase -
  AEI18_RS03300 (AEI18_03320) - 595475..596290 (+) 816 WP_052777351.1 DNA adenine methylase -
  AEI18_RS03305 (AEI18_03325) - 596318..596605 (-) 288 WP_002865289.1 hypothetical protein -
  AEI18_RS03310 (AEI18_03330) - 596685..596879 (-) 195 WP_002843339.1 hypothetical protein -
  AEI18_RS03315 (AEI18_03335) - 596889..597209 (-) 321 WP_002865000.1 hypothetical protein -
  AEI18_RS03320 (AEI18_03340) - 597290..597919 (-) 630 WP_057031546.1 helix-turn-helix transcriptional regulator -
  AEI18_RS03325 - 597941..598264 (-) 324 Protein_655 S24 family peptidase -
  AEI18_RS03330 (AEI18_03345) - 598445..599098 (+) 654 Protein_656 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28919.74 Da        Isoelectric Point: 7.7211

>NTDB_id=152803 AEI18_RS03125 WP_002918419.1 574492..575265(+) (dprA) [Campylobacter jejuni strain CJ075CC460]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNRVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=152803 AEI18_RS03125 WP_002918419.1 574492..575265(+) (dprA) [Campylobacter jejuni strain CJ075CC460]
ATGGCAAGTGAAATTTTGCCTGATGAGTTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATCGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCGCAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment