Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEI24_RS07005 Genome accession   NZ_CP012234
Coordinates   1339011..1339322 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ048CCUA     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1334011..1344322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI24_RS06985 (AEI24_06945) ctsE 1334881..1336440 (-) 1560 WP_165434274.1 GspE/PulE family protein Machinery gene
  AEI24_RS06990 (AEI24_06950) - 1336430..1337016 (-) 587 Protein_1373 transformation system protein -
  AEI24_RS06995 (AEI24_06955) ctsP 1337020..1337628 (-) 609 WP_002932308.1 ATP-binding protein Machinery gene
  AEI24_RS07000 (AEI24_06960) mshL 1337621..1339033 (-) 1413 Protein_1375 pilus (MSHA type) biogenesis protein MshL -
  AEI24_RS07005 (AEI24_06965) ctsR 1339011..1339322 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  AEI24_RS07010 (AEI24_06970) nifJ 1339346..1342906 (-) 3561 WP_002932311.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI24_RS07015 (AEI24_06975) - 1342999..1343640 (-) 642 WP_002932313.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=152766 AEI24_RS07005 WP_002862131.1 1339011..1339322(-) (ctsR) [Campylobacter jejuni strain CJ048CCUA]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=152766 AEI24_RS07005 WP_002862131.1 1339011..1339322(-) (ctsR) [Campylobacter jejuni strain CJ048CCUA]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment