Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   AEI24_RS06985 Genome accession   NZ_CP012234
Coordinates   1334881..1336440 (-) Length   519 a.a.
NCBI ID   WP_165434274.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ048CCUA     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1329881..1341440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI24_RS06960 (AEI24_06920) - 1329891..1330325 (+) 435 WP_002779263.1 flagellar protein FlgN -
  AEI24_RS06965 (AEI24_06925) flgK 1330335..1332161 (+) 1827 WP_165434273.1 flagellar hook-associated protein FlgK -
  AEI24_RS06970 (AEI24_06930) - 1332178..1332942 (+) 765 WP_002932297.1 TIGR02757 family protein -
  AEI24_RS06975 (AEI24_06935) - 1332945..1333709 (+) 765 WP_002932298.1 TSUP family transporter -
  AEI24_RS06980 (AEI24_06940) - 1333706..1334884 (-) 1179 Protein_1371 type II secretion system F family protein -
  AEI24_RS06985 (AEI24_06945) ctsE 1334881..1336440 (-) 1560 WP_165434274.1 GspE/PulE family protein Machinery gene
  AEI24_RS06990 (AEI24_06950) - 1336430..1337016 (-) 587 Protein_1373 transformation system protein -
  AEI24_RS06995 (AEI24_06955) ctsP 1337020..1337628 (-) 609 WP_002932308.1 ATP-binding protein Machinery gene
  AEI24_RS07000 (AEI24_06960) mshL 1337621..1339033 (-) 1413 Protein_1375 pilus (MSHA type) biogenesis protein MshL -
  AEI24_RS07005 (AEI24_06965) ctsR 1339011..1339322 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60062.84 Da        Isoelectric Point: 5.5718

>NTDB_id=152764 AEI24_RS06985 WP_165434274.1 1334881..1336440(-) (ctsE) [Campylobacter jejuni strain CJ048CCUA]
MESRMDKIFQAYIDNEISLDEICAKFNITSWDFFKKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENQKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDVYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVAIRILKHDKEILDLYKLNLGDKNLEILKKILHRPNGVILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSILRVILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLACAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=152764 AEI24_RS06985 WP_165434274.1 1334881..1336440(-) (ctsE) [Campylobacter jejuni strain CJ048CCUA]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCGCTAAATTTAA
TATCACTTCTTGGGATTTTTTTAAAAAATTAGCAAATTTTTGTAATTTACATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCTAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGTATTAAGCTTA
GACTTGAATGGCAAGAAAATCAAAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAAGCAAGGAATGATGACGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATGTTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACACAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGCTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGTATAAACTAAATCT
TGGAGATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAGTGATTTTATTAACCGGCCCTACTGGTA
GTGGTAAAAGTACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATTTCAGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTTAATTCAAAAGTTGGAGTCGAGTTTAATAGTATTTTAAGAGT
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGCAA
ACAAAAAAGTAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAATGCTTAGAGATCAATGAAGATTTAGCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

98.459

100

0.985

Multiple sequence alignment