Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEH99_RS06880 Genome accession   NZ_CP012227
Coordinates   1335707..1336018 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ021CC45     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1330707..1341018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEH99_RS06860 (AEH99_06885) ctsE 1331576..1333135 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  AEH99_RS06865 (AEH99_06890) ctsX 1333125..1333712 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  AEH99_RS06870 (AEH99_06895) ctsP 1333716..1334324 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  AEH99_RS06875 (AEH99_06900) ctsD 1334317..1335729 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEH99_RS06880 (AEH99_06905) ctsR 1335707..1336018 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  AEH99_RS06885 (AEH99_06910) nifJ 1336042..1339602 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEH99_RS06890 (AEH99_06915) - 1339695..1340336 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=152607 AEH99_RS06880 WP_002862131.1 1335707..1336018(-) (ctsR) [Campylobacter jejuni strain CJ021CC45]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=152607 AEH99_RS06880 WP_002862131.1 1335707..1336018(-) (ctsR) [Campylobacter jejuni strain CJ021CC45]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment