Detailed information NTG0152604

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GJ11_RS19430
• Genome accession: NZ_CP015229
• Coordinates: 3501737..3502729 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 06-00048
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3496737..3507729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJ11_RS19405 (GJ11_17795)	ygbN	3497392..3498756 (+)	1365	WP_065227499.1	GntP family transporter	-
GJ11_RS19410 (GJ11_17800)	-	3498795..3499031 (-)	237	WP_000562985.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GJ11_RS19415 (GJ11_17805)	-	3499042..3500469 (-)	1428	WP_065227500.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GJ11_RS19420 (GJ11_17810)	-	3500469..3501062 (-)	594	WP_065227501.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GJ11_RS19425 (GJ11_17815)	-	3501209..3501616 (+)	408	WP_065227502.1	MarR family winged helix-turn-helix transcriptional regulator	-
GJ11_RS19430 (GJ11_17820)	rpoS	3501737..3502729 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GJ11_RS19435 (GJ11_17825)	nlpD	3502792..3503886 (-)	1095	WP_306308207.1	murein hydrolase activator NlpD	-
GJ11_RS19440 (GJ11_17830)	pcm	3504071..3504697 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
GJ11_RS19445 (GJ11_17835)	surE	3504691..3505452 (-)	762	WP_065227503.1	5'/3'-nucleotidase SurE	-
GJ11_RS19450 (GJ11_17840)	truD	3505433..3506482 (-)	1050	WP_065227504.1	tRNA pseudouridine(13) synthase TruD	-
GJ11_RS19455 (GJ11_17845)	ispF	3506479..3506958 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GJ11_RS19460 (GJ11_17850)	ispD	3506958..3507668 (-)	711	WP_065227505.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=152604 GJ11_RS19430 WP_000081550.1 3501737..3502729(-) (rpoS) [Escherichia coli strain 06-00048]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=152604 GJ11_RS19430 WP_000081550.1 3501737..3502729(-) (rpoS) [Escherichia coli strain 06-00048]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715