Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   AEI23_RS07955 Genome accession   NZ_CP012221
Coordinates   1486817..1487998 (-) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni strain CJ018CCUA     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481817..1492998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI23_RS07925 (AEI23_07940) flgJ 1482373..1482702 (+) 330 WP_115766860.1 rod-binding protein -
  AEI23_RS07930 (AEI23_07945) flgM 1482765..1482962 (+) 198 WP_002872343.1 flagellar biosynthesis anti-sigma factor FlgM -
  AEI23_RS07935 (AEI23_07950) - 1483005..1483439 (+) 435 WP_002779263.1 flagellar protein FlgN -
  AEI23_RS07940 (AEI23_07955) flgK 1483449..1485275 (+) 1827 WP_115766861.1 flagellar hook-associated protein FlgK -
  AEI23_RS07945 (AEI23_07960) - 1485292..1486056 (+) 765 WP_052786571.1 TIGR02757 family protein -
  AEI23_RS07950 (AEI23_07965) - 1486060..1486824 (+) 765 WP_002855821.1 TSUP family transporter -
  AEI23_RS07955 (AEI23_07970) ctsF 1486817..1487998 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  AEI23_RS07960 (AEI23_07975) ctsE 1487995..1489554 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  AEI23_RS07965 (AEI23_07980) ctsX 1489544..1490131 (-) 588 WP_002851370.1 membrane protein Machinery gene
  AEI23_RS07970 (AEI23_07985) ctsP 1490135..1490743 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI23_RS07975 (AEI23_07990) ctsD 1490736..1492148 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI23_RS07980 (AEI23_07995) ctsR 1492126..1492437 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=152520 AEI23_RS07955 WP_002851165.1 1486817..1487998(-) (ctsF) [Campylobacter jejuni strain CJ018CCUA]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=152520 AEI23_RS07955 WP_002851165.1 1486817..1487998(-) (ctsF) [Campylobacter jejuni strain CJ018CCUA]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99

Multiple sequence alignment