Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEI23_RS07980 Genome accession   NZ_CP012221
Coordinates   1492126..1492437 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain CJ018CCUA     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1487126..1497437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI23_RS07960 (AEI23_07975) ctsE 1487995..1489554 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  AEI23_RS07965 (AEI23_07980) ctsX 1489544..1490131 (-) 588 WP_002851370.1 membrane protein Machinery gene
  AEI23_RS07970 (AEI23_07985) ctsP 1490135..1490743 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI23_RS07975 (AEI23_07990) ctsD 1490736..1492148 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI23_RS07980 (AEI23_07995) ctsR 1492126..1492437 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  AEI23_RS07985 (AEI23_08000) nifJ 1492461..1496021 (-) 3561 WP_115766862.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI23_RS07990 (AEI23_08005) - 1496115..1496756 (-) 642 WP_052786573.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=152525 AEI23_RS07980 WP_002855438.1 1492126..1492437(-) (ctsR) [Campylobacter jejuni strain CJ018CCUA]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=152525 AEI23_RS07980 WP_002855438.1 1492126..1492437(-) (ctsR) [Campylobacter jejuni strain CJ018CCUA]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment