Detailed information NTG0152525

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GJ12_RS18990
• Genome accession: NZ_CP015228
• Coordinates: 3438390..3439382 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 09-00049
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3433390..3444382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJ12_RS18965 (GJ12_17765)	ygbN	3434045..3435409 (+)	1365	WP_000104439.1	GntP family transporter	-
GJ12_RS18970 (GJ12_17770)	-	3435448..3435684 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GJ12_RS18975 (GJ12_17775)	-	3435695..3437122 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GJ12_RS18980 (GJ12_17780)	-	3437122..3437715 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GJ12_RS18985 (GJ12_17785)	-	3437862..3438269 (+)	408	WP_001208072.1	MarR family winged helix-turn-helix transcriptional regulator	-
GJ12_RS18990 (GJ12_17790)	rpoS	3438390..3439382 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GJ12_RS18995 (GJ12_17795)	nlpD	3439445..3440539 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GJ12_RS19000 (GJ12_17800)	pcm	3440724..3441350 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GJ12_RS19005 (GJ12_17805)	surE	3441344..3442105 (-)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
GJ12_RS19010 (GJ12_17810)	truD	3442086..3443135 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
GJ12_RS19015 (GJ12_17815)	ispF	3443132..3443611 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GJ12_RS19020 (GJ12_17820)	ispD	3443611..3444321 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=152525 GJ12_RS18990 WP_000081550.1 3438390..3439382(-) (rpoS) [Escherichia coli strain 09-00049]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=152525 GJ12_RS18990 WP_000081550.1 3438390..3439382(-) (rpoS) [Escherichia coli strain 09-00049]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715