Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AEI23_RS03210 Genome accession   NZ_CP012221
Coordinates   578306..579079 (+) Length   257 a.a.
NCBI ID   WP_002872370.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ018CCUA     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 573306..584079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI23_RS03195 (AEI23_03200) - 574173..576107 (-) 1935 WP_115766776.1 ribonuclease R family protein -
  AEI23_RS03200 (AEI23_03205) ilvC 576226..577248 (+) 1023 WP_002872368.1 ketol-acid reductoisomerase -
  AEI23_RS03205 (AEI23_03210) - 577252..578316 (+) 1065 WP_002872369.1 divergent polysaccharide deacetylase family protein -
  AEI23_RS03210 (AEI23_03215) dprA 578306..579079 (+) 774 WP_002872370.1 DNA-processing protein DprA Machinery gene
  AEI23_RS03215 (AEI23_03220) ruvX 579076..579459 (+) 384 WP_002872371.1 Holliday junction resolvase RuvX -
  AEI23_RS03220 (AEI23_03225) - 579488..580327 (+) 840 WP_079264093.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI23_RS03225 (AEI23_03230) msrA 580502..580999 (-) 498 WP_002872373.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI23_RS03230 (AEI23_03235) ppa 581040..581558 (-) 519 WP_002871349.1 inorganic diphosphatase -
  AEI23_RS03235 (AEI23_03240) adk 581568..582146 (-) 579 WP_002872374.1 adenylate kinase -
  AEI23_RS03240 (AEI23_03245) aspS 582143..583894 (-) 1752 WP_002872375.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28724.54 Da        Isoelectric Point: 7.6510

>NTDB_id=152505 AEI23_RS03210 WP_002872370.1 578306..579079(+) (dprA) [Campylobacter jejuni strain CJ018CCUA]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SVAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=152505 AEI23_RS03210 WP_002872370.1 578306..579079(+) (dprA) [Campylobacter jejuni strain CJ018CCUA]
ATGGCAAGTGAAATTTTGCCTGATGAATTTCTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTGGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGTGGTGCTTTGGGTGTGGATATCACCGCA
AGTGTGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTAGTTGCGCAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment