Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   AEI23_RS03020 Genome accession   NZ_CP012221
Coordinates   536538..537188 (-) Length   216 a.a.
NCBI ID   WP_057035928.1    Uniprot ID   A0AAX2M1G0
Organism   Campylobacter jejuni strain CJ018CCUA     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 531538..542188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI23_RS02985 (AEI23_02990) - 531916..532920 (+) 1005 WP_002852264.1 membrane protein -
  AEI23_RS02990 (AEI23_02995) tlyA 532917..533678 (+) 762 WP_115766766.1 TlyA family RNA methyltransferase -
  AEI23_RS02995 (AEI23_03000) ribF 533644..534498 (+) 855 WP_002873780.1 bifunctional riboflavin kinase/FAD synthetase -
  AEI23_RS03000 (AEI23_03005) cmoA 534485..535195 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  AEI23_RS03005 (AEI23_03010) - 535185..535406 (-) 222 WP_002859102.1 EexN family lipoprotein -
  AEI23_RS03010 (AEI23_03015) - 535403..535837 (-) 435 WP_002872584.1 EexN family lipoprotein -
  AEI23_RS03015 (AEI23_03020) - 535895..536527 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  AEI23_RS03020 (AEI23_03025) CJE0566 536538..537188 (-) 651 WP_057035928.1 DNA/RNA non-specific endonuclease Regulator
  AEI23_RS03025 (AEI23_03030) nth 537185..537811 (-) 627 WP_002852225.1 endonuclease III -
  AEI23_RS03030 (AEI23_03035) peb4 537892..538713 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  AEI23_RS03035 (AEI23_03040) fbaA 538713..539777 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  AEI23_RS03040 (AEI23_03045) - 539872..541314 (+) 1443 WP_115766767.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25486.13 Da        Isoelectric Point: 9.6573

>NTDB_id=152504 AEI23_RS03020 WP_057035928.1 536538..537188(-) (CJE0566) [Campylobacter jejuni strain CJ018CCUA]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKIEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=152504 AEI23_RS03020 WP_057035928.1 536538..537188(-) (CJE0566) [Campylobacter jejuni strain CJ018CCUA]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGATAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment