Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   AEI22_RS06755 Genome accession   NZ_CP012220
Coordinates   1303948..1305360 (-) Length   470 a.a.
NCBI ID   WP_044260333.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ090CC1332     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1298948..1310360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI22_RS06730 (AEI22_06700) - 1299272..1300036 (+) 765 WP_002867032.1 TSUP family transporter -
  AEI22_RS06735 (AEI22_06705) ctsF 1300029..1301210 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  AEI22_RS06740 (AEI22_06710) ctsE 1301207..1302766 (-) 1560 WP_020247122.1 GspE/PulE family protein Machinery gene
  AEI22_RS06745 (AEI22_06715) ctsX 1302756..1303343 (-) 588 WP_002851370.1 membrane protein Machinery gene
  AEI22_RS06750 (AEI22_06720) ctsP 1303347..1303955 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI22_RS06755 (AEI22_06725) ctsD 1303948..1305360 (-) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI22_RS06760 (AEI22_06730) ctsR 1305338..1305649 (-) 312 WP_002880445.1 hypothetical protein Machinery gene
  AEI22_RS06765 (AEI22_06735) nifJ 1305673..1309233 (-) 3561 WP_115794638.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI22_RS06770 (AEI22_06740) - 1309326..1309967 (-) 642 WP_052797933.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52983.48 Da        Isoelectric Point: 6.6156

>NTDB_id=152496 AEI22_RS06755 WP_044260333.1 1303948..1305360(-) (ctsD) [Campylobacter jejuni strain CJ090CC1332]
MIRLILINILCCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQANNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=152496 AEI22_RS06755 WP_044260333.1 1303948..1305360(-) (ctsD) [Campylobacter jejuni strain CJ090CC1332]
ATGATAAGATTAATATTAATTAACATTCTTTGTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTCAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGCAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.149

100

0.991

Multiple sequence alignment