Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   AEI22_RS06735 Genome accession   NZ_CP012220
Coordinates   1300029..1301210 (-) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni strain CJ090CC1332     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1295029..1306210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI22_RS06705 (AEI22_06675) - 1295573..1295914 (+) 342 WP_002784057.1 hypothetical protein -
  AEI22_RS06710 (AEI22_06680) flgM 1295977..1296174 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  AEI22_RS06715 (AEI22_06685) - 1296217..1296651 (+) 435 WP_002779263.1 flagellar protein FlgN -
  AEI22_RS06720 (AEI22_06690) flgK 1296661..1298487 (+) 1827 WP_002867029.1 flagellar hook-associated protein FlgK -
  AEI22_RS06725 (AEI22_06695) - 1298504..1299268 (+) 765 WP_002877433.1 TIGR02757 family protein -
  AEI22_RS06730 (AEI22_06700) - 1299272..1300036 (+) 765 WP_002867032.1 TSUP family transporter -
  AEI22_RS06735 (AEI22_06705) ctsF 1300029..1301210 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  AEI22_RS06740 (AEI22_06710) ctsE 1301207..1302766 (-) 1560 WP_020247122.1 GspE/PulE family protein Machinery gene
  AEI22_RS06745 (AEI22_06715) ctsX 1302756..1303343 (-) 588 WP_002851370.1 membrane protein Machinery gene
  AEI22_RS06750 (AEI22_06720) ctsP 1303347..1303955 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI22_RS06755 (AEI22_06725) ctsD 1303948..1305360 (-) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI22_RS06760 (AEI22_06730) ctsR 1305338..1305649 (-) 312 WP_002880445.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=152492 AEI22_RS06735 WP_002868229.1 1300029..1301210(-) (ctsF) [Campylobacter jejuni strain CJ090CC1332]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=152492 AEI22_RS06735 WP_002868229.1 1300029..1301210(-) (ctsF) [Campylobacter jejuni strain CJ090CC1332]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment