Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AEI22_RS02800 Genome accession   NZ_CP012220
Coordinates   525155..525928 (+) Length   257 a.a.
NCBI ID   WP_002866495.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ090CC1332     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 520155..530928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI22_RS02785 (AEI22_02805) - 521004..522938 (-) 1935 WP_115794450.1 ribonuclease R family protein -
  AEI22_RS02790 (AEI22_02810) ilvC 523057..524079 (+) 1023 WP_058000803.1 ketol-acid reductoisomerase -
  AEI22_RS02795 (AEI22_02815) - 524083..525165 (+) 1083 WP_115794451.1 divergent polysaccharide deacetylase family protein -
  AEI22_RS02800 (AEI22_02820) dprA 525155..525928 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  AEI22_RS02805 (AEI22_02825) ruvX 525925..526308 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  AEI22_RS02810 (AEI22_02830) - 526337..527176 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI22_RS02815 (AEI22_02835) msrA 527352..527849 (-) 498 WP_115794452.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI22_RS02820 (AEI22_02840) ppa 527891..528409 (-) 519 WP_002871349.1 inorganic diphosphatase -
  AEI22_RS02825 (AEI22_02845) adk 528419..528997 (-) 579 WP_052794065.1 adenylate kinase -
  AEI22_RS02830 (AEI22_02850) aspS 528994..530745 (-) 1752 WP_058000807.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28742.58 Da        Isoelectric Point: 7.6510

>NTDB_id=152479 AEI22_RS02800 WP_002866495.1 525155..525928(+) (dprA) [Campylobacter jejuni strain CJ090CC1332]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=152479 AEI22_RS02800 WP_002866495.1 525155..525928(+) (dprA) [Campylobacter jejuni strain CJ090CC1332]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTGGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment