Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   AEI15_RS06890 Genome accession   NZ_CP012214
Coordinates   1323467..1324648 (-) Length   393 a.a.
NCBI ID   WP_002873600.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ088CC52     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1318467..1329648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI15_RS06860 (AEI15_06845) - 1319012..1319353 (+) 342 WP_002884788.1 hypothetical protein -
  AEI15_RS06865 (AEI15_06850) flgM 1319416..1319613 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  AEI15_RS06870 (AEI15_06855) - 1319655..1320089 (+) 435 WP_002779263.1 flagellar protein FlgN -
  AEI15_RS06875 (AEI15_06860) flgK 1320099..1321925 (+) 1827 WP_002855300.1 flagellar hook-associated protein FlgK -
  AEI15_RS06880 (AEI15_06865) - 1321942..1322706 (+) 765 WP_002851318.1 TIGR02757 family protein -
  AEI15_RS06885 (AEI15_06870) - 1322710..1323480 (+) 771 WP_002873601.1 TSUP family transporter -
  AEI15_RS06890 (AEI15_06875) ctsF 1323467..1324648 (-) 1182 WP_002873600.1 type II secretion system F family protein Machinery gene
  AEI15_RS06895 (AEI15_06880) ctsE 1324645..1326204 (-) 1560 WP_032582256.1 GspE/PulE family protein Machinery gene
  AEI15_RS06900 (AEI15_06885) ctsX 1326194..1326781 (-) 588 WP_002884783.1 hypothetical protein Machinery gene
  AEI15_RS06905 (AEI15_06890) ctsP 1326785..1327393 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI15_RS06910 (AEI15_06895) ctsD 1327386..1328798 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI15_RS06915 (AEI15_06900) ctsR 1328776..1329087 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45731.32 Da        Isoelectric Point: 8.8959

>NTDB_id=152385 AEI15_RS06890 WP_002873600.1 1323467..1324648(-) (ctsF) [Campylobacter jejuni strain CJ088CC52]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=152385 AEI15_RS06890 WP_002873600.1 1323467..1324648(-) (ctsF) [Campylobacter jejuni strain CJ088CC52]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment