Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AEI15_RS06915 Genome accession   NZ_CP012214
Coordinates   1328776..1329087 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain CJ088CC52     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1323776..1334087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI15_RS06895 (AEI15_06880) ctsE 1324645..1326204 (-) 1560 WP_032582256.1 GspE/PulE family protein Machinery gene
  AEI15_RS06900 (AEI15_06885) ctsX 1326194..1326781 (-) 588 WP_002884783.1 hypothetical protein Machinery gene
  AEI15_RS06905 (AEI15_06890) ctsP 1326785..1327393 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AEI15_RS06910 (AEI15_06895) ctsD 1327386..1328798 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI15_RS06915 (AEI15_06900) ctsR 1328776..1329087 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  AEI15_RS06920 (AEI15_06905) nifJ 1329111..1332671 (-) 3561 WP_002884781.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AEI15_RS06925 (AEI15_06910) - 1332764..1333405 (-) 642 WP_052777740.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=152390 AEI15_RS06915 WP_002855438.1 1328776..1329087(-) (ctsR) [Campylobacter jejuni strain CJ088CC52]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=152390 AEI15_RS06915 WP_002855438.1 1328776..1329087(-) (ctsR) [Campylobacter jejuni strain CJ088CC52]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment