Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AEI15_RS02950 Genome accession   NZ_CP012214
Coordinates   548453..549226 (+) Length   257 a.a.
NCBI ID   WP_057034975.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ088CC52     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 543453..554226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI15_RS02935 (AEI15_02920) - 544302..546236 (-) 1935 WP_002884143.1 ribonuclease R family protein -
  AEI15_RS02940 (AEI15_02925) ilvC 546355..547377 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  AEI15_RS02945 (AEI15_02930) - 547381..548463 (+) 1083 WP_002874286.1 divergent polysaccharide deacetylase family protein -
  AEI15_RS02950 (AEI15_02935) dprA 548453..549226 (+) 774 WP_057034975.1 DNA-processing protein DprA Machinery gene
  AEI15_RS02955 (AEI15_02940) ruvX 549223..549606 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  AEI15_RS02960 (AEI15_02945) - 549635..550474 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI15_RS02965 (AEI15_02950) msrA 550651..551148 (-) 498 WP_002875505.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI15_RS02970 (AEI15_02955) ppa 551190..551708 (-) 519 WP_002867724.1 inorganic diphosphatase -
  AEI15_RS02975 (AEI15_02960) adk 551718..552296 (-) 579 WP_002859580.1 adenylate kinase -
  AEI15_RS02980 (AEI15_02965) aspS 552293..554044 (-) 1752 WP_002875506.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28748.50 Da        Isoelectric Point: 7.0848

>NTDB_id=152371 AEI15_RS02950 WP_057034975.1 548453..549226(+) (dprA) [Campylobacter jejuni strain CJ088CC52]
MASEILPDGFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYALPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=152371 AEI15_RS02950 WP_057034975.1 548453..549226(+) (dprA) [Campylobacter jejuni strain CJ088CC52]
ATGGCAAGTGAAATTTTGCCTGATGGATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAAGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGCTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.276

100

0.973
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment