Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AEI26_RS02970 Genome accession   NZ_CP012212
Coordinates   564034..564807 (+) Length   257 a.a.
NCBI ID   WP_044794335.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ017CCUA     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 559034..569807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI26_RS02955 (AEI26_02940) - 559883..561817 (-) 1935 WP_070298733.1 ribonuclease R family protein -
  AEI26_RS02960 (AEI26_02945) ilvC 561936..562958 (+) 1023 WP_002871355.1 ketol-acid reductoisomerase -
  AEI26_RS02965 (AEI26_02950) - 562962..564044 (+) 1083 WP_070298734.1 divergent polysaccharide deacetylase family protein -
  AEI26_RS02970 (AEI26_02955) dprA 564034..564807 (+) 774 WP_044794335.1 DNA-processing protein DprA Machinery gene
  AEI26_RS02975 (AEI26_02960) ruvX 564804..565187 (+) 384 WP_044794336.1 Holliday junction resolvase RuvX -
  AEI26_RS02980 (AEI26_02965) - 565216..566055 (+) 840 WP_079396361.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI26_RS02985 (AEI26_02970) msrA 566231..566728 (-) 498 WP_044794338.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI26_RS02990 (AEI26_02975) ppa 566769..567287 (-) 519 WP_002871349.1 inorganic diphosphatase -
  AEI26_RS02995 (AEI26_02980) adk 567297..567875 (-) 579 WP_002855137.1 adenylate kinase -
  AEI26_RS03000 (AEI26_02985) aspS 567872..569623 (-) 1752 WP_070298753.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28880.88 Da        Isoelectric Point: 8.9493

>NTDB_id=152317 AEI26_RS02970 WP_044794335.1 564034..564807(+) (dprA) [Campylobacter jejuni strain CJ017CCUA]
MASEILPDEFLKLFKDLKKPPKKLHYKGNLSLLRQDKIAIIGSRRMSVYTKNCVFSLASMLKNTHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLVQIYPRTNEKIIKQIYENALALSEYEDDYLPKKYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
ARLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFANIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=152317 AEI26_RS02970 WP_044794335.1 564034..564807(+) (dprA) [Campylobacter jejuni strain CJ017CCUA]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTGAAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAGACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATACCCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACTGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGTTCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAACGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAAATATGACTTTTTAC
TAAGAAACCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAGGCTTGCTTTAGAGCTTAATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATCTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAATATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAC
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

96.484

99.611

0.961
  dprA Helicobacter pylori 26695

49.587

94.163

0.467

Multiple sequence alignment