Detailed information    

insolico Bioinformatically predicted

Overview


Name   ctsX   Type   Machinery gene
Locus tag   AEI10_RS07225 Genome accession   NZ_CP012210
Coordinates   1375705..1376292 (-) Length   195 a.a.
NCBI ID   WP_002867036.1    Uniprot ID   A0A5T1DZF0
Organism   Campylobacter jejuni strain CJ515CC45     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1370705..1381292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI10_RS07205 (AEI10_07155) - 1371453..1372217 (+) 765 WP_002877433.1 TIGR02757 family protein -
  AEI10_RS07210 (AEI10_07160) - 1372221..1372985 (+) 765 WP_002867032.1 TSUP family transporter -
  AEI10_RS07215 (AEI10_07165) ctsF 1372978..1374159 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  AEI10_RS07220 (AEI10_07170) ctsE 1374156..1375715 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  AEI10_RS07225 (AEI10_07175) ctsX 1375705..1376292 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  AEI10_RS07230 (AEI10_07180) ctsP 1376296..1376903 (-) 608 Protein_1399 ATP-binding protein -
  AEI10_RS07235 (AEI10_07185) ctsD 1376896..1378308 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI10_RS07240 (AEI10_07190) ctsR 1378286..1378597 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence


Protein


Download         Length: 195 a.a.        Molecular weight: 23375.43 Da        Isoelectric Point: 9.8409

>NTDB_id=152281 AEI10_RS07225 WP_002867036.1 1375705..1376292(-) (ctsX) [Campylobacter jejuni strain CJ515CC45]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWTLKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=152281 AEI10_RS07225 WP_002867036.1 1375705..1376292(-) (ctsX) [Campylobacter jejuni strain CJ515CC45]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACACATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGACTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5T1DZF0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99


Multiple sequence alignment