Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   A5J11_RS13800 Genome accession   NZ_CP015173
Coordinates   2733581..2734294 (+) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain RIVM6519     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2728581..2739294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5J11_RS14675 - 2729933..2730196 (-) 264 WP_001205732.1 hypothetical protein -
  A5J11_RS13745 (A5J11_13735) - 2730205..2730465 (-) 261 WP_000291510.1 DUF1108 family protein -
  A5J11_RS13750 (A5J11_13740) - 2730470..2730772 (-) 303 WP_000165371.1 DUF2482 family protein -
  A5J11_RS13755 (A5J11_13745) - 2730865..2731026 (-) 162 WP_000066025.1 DUF1270 domain-containing protein -
  A5J11_RS13760 (A5J11_13750) - 2731023..2731343 (-) 321 WP_001120935.1 DUF771 domain-containing protein -
  A5J11_RS14995 - 2731492..2731591 (-) 100 Protein_2641 hypothetical protein -
  A5J11_RS13770 (A5J11_13760) - 2731622..2731816 (-) 195 WP_000388066.1 hypothetical protein -
  A5J11_RS13775 (A5J11_13765) - 2731833..2732585 (-) 753 WP_001148606.1 phage antirepressor KilAC domain-containing protein -
  A5J11_RS13780 (A5J11_13770) - 2732636..2732965 (+) 330 WP_000128907.1 hypothetical protein -
  A5J11_RS13785 (A5J11_13775) - 2732954..2733169 (-) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  A5J11_RS13790 (A5J11_13780) - 2733185..2733448 (-) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  A5J11_RS13795 (A5J11_13785) - 2733445..2733618 (-) 174 WP_001801500.1 hypothetical protein -
  A5J11_RS13800 (A5J11_13790) irvR 2733581..2734294 (+) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  A5J11_RS13805 (A5J11_13795) - 2734310..2735242 (+) 933 WP_000759682.1 exonuclease domain-containing protein -
  A5J11_RS13810 (A5J11_13800) - 2735248..2735589 (+) 342 WP_000591749.1 hypothetical protein -
  A5J11_RS13815 (A5J11_13805) - 2735793..2735975 (+) 183 WP_000705248.1 hypothetical protein -
  A5J11_RS13820 (A5J11_13810) - 2736075..2736539 (+) 465 WP_000825947.1 hypothetical protein -
  A5J11_RS13825 (A5J11_13815) - 2736598..2737635 (+) 1038 WP_000857191.1 tyrosine-type recombinase/integrase -
  A5J11_RS13830 (A5J11_13820) sph 2737692..2738516 (+) 825 Protein_2654 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=152283 A5J11_RS13800 WP_001031454.1 2733581..2734294(+) (irvR) [Staphylococcus aureus strain RIVM6519]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=152283 A5J11_RS13800 WP_001031454.1 2733581..2734294(+) (irvR) [Staphylococcus aureus strain RIVM6519]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401

Multiple sequence alignment