Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WM90_RS18500 Genome accession   NZ_CP015159
Coordinates   3672565..3673041 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain Eco889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3667565..3678041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM90_RS18475 (WM90_18480) - 3668462..3669532 (+) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  WM90_RS18480 (WM90_18485) - 3669668..3670345 (+) 678 WP_001362823.1 hypothetical protein -
  WM90_RS18485 (WM90_18490) - 3670361..3670771 (+) 411 WP_000846704.1 hypothetical protein -
  WM90_RS18490 (WM90_18495) - 3670992..3671813 (+) 822 WP_001234710.1 DUF932 domain-containing protein -
  WM90_RS18495 (WM90_18500) - 3672076..3672549 (+) 474 WP_001385393.1 antirestriction protein -
  WM90_RS18500 (WM90_18505) radC 3672565..3673041 (+) 477 WP_001186773.1 JAB domain-containing protein Machinery gene
  WM90_RS18505 (WM90_18510) yeeT 3673104..3673325 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  WM90_RS18510 (WM90_18515) cbeA 3673405..3673773 (+) 369 WP_001546021.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  WM90_RS18515 (WM90_18520) cbtA 3673862..3674236 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  WM90_RS18520 (WM90_18525) yeeW 3674233..3674427 (+) 195 WP_000988601.1 DUF5983 family protein -
  WM90_RS30035 (WM90_18530) - 3674461..3674553 (+) 93 Protein_3553 DUF957 domain-containing protein -
  WM90_RS18530 (WM90_18535) istB 3674916..3675662 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  WM90_RS18535 (WM90_18540) istA 3675677..3677218 (-) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  WM90_RS31340 - 3677429..3677566 (-) 138 Protein_3556 transposase domain-containing protein -
  WM90_RS31345 (WM90_18545) - 3677629..3677811 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=152169 WM90_RS18500 WP_001186773.1 3672565..3673041(+) (radC) [Escherichia coli strain Eco889]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=152169 WM90_RS18500 WP_001186773.1 3672565..3673041(+) (radC) [Escherichia coli strain Eco889]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment