Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AKG30_RS00050 | Genome accession | NZ_CP012187 |
| Coordinates | 11420..12016 (+) | Length | 198 a.a. |
| NCBI ID | WP_003568462.1 | Uniprot ID | A0A0C9PXZ6 |
| Organism | Lacticaseibacillus paracasei strain CAUH35 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 6420..17016
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKG30_RS00030 (AKG30_00030) | gyrA | 6920..9541 (+) | 2622 | WP_050893443.1 | DNA gyrase subunit A | - |
| AKG30_RS00035 (AKG30_00035) | deoC | 9646..10350 (-) | 705 | WP_003568456.1 | deoxyribose-phosphate aldolase | - |
| AKG30_RS00040 (AKG30_00040) | ssb | 10533..10965 (+) | 433 | Protein_7 | single-stranded DNA-binding protein | - |
| AKG30_RS00045 (AKG30_00045) | rpsF | 11093..11389 (+) | 297 | WP_003568460.1 | 30S ribosomal protein S6 | - |
| AKG30_RS00050 (AKG30_00050) | ssb | 11420..12016 (+) | 597 | WP_003568462.1 | single-stranded DNA-binding protein | Machinery gene |
| AKG30_RS00055 (AKG30_00055) | rpsR | 12103..12339 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| AKG30_RS00060 (AKG30_00060) | - | 12780..14258 (+) | 1479 | WP_050893444.1 | cytochrome ubiquinol oxidase subunit I | - |
| AKG30_RS00065 (AKG30_00065) | cydB | 14251..15270 (+) | 1020 | WP_003568540.1 | cytochrome d ubiquinol oxidase subunit II | - |
| AKG30_RS00070 (AKG30_00070) | - | 15297..15491 (+) | 195 | WP_003600287.1 | hypothetical protein | - |
| AKG30_RS00075 (AKG30_00075) | - | 15909..16127 (+) | 219 | WP_011673930.1 | Blp family class II bacteriocin | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21138.87 Da Isoelectric Point: 4.9056
>NTDB_id=152092 AKG30_RS00050 WP_003568462.1 11420..12016(+) (ssb) [Lacticaseibacillus paracasei strain CAUH35]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 597 bp
>NTDB_id=152092 AKG30_RS00050 WP_003568462.1 11420..12016(+) (ssb) [Lacticaseibacillus paracasei strain CAUH35]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAGGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAGGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.296 |
100 |
0.596 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.485 |
100 |
0.485 |