Detailed information NTG0151799

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AC251_RS05010
• Genome accession: NZ_CP015115
• Coordinates: 1059838..1062126 (+)
• Length: 762 a.a.
• NCBI ID: WP_011002381.1
• Uniprot ID: Q8XWL0
• Organism: Ralstonia pseudosolanacearum strain EP1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1054838..1067126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AC251_RS04985 (AC251_04825)	-	1056275..1056913 (+)	639	WP_019718360.1	IS1595 family transposase	-
AC251_RS04990 (AC251_04830)	-	1057087..1057299 (+)	213	WP_011002385.1	hypothetical protein	-
AC251_RS04995 (AC251_04835)	-	1057488..1058108 (-)	621	WP_011002384.1	DUF4126 domain-containing protein	-
AC251_RS05000 (AC251_04840)	-	1058758..1058961 (-)	204	WP_011002383.1	cold-shock protein	-
AC251_RS05005 (AC251_04845)	clpS	1059515..1059841 (+)	327	WP_011002382.1	ATP-dependent Clp protease adapter ClpS	-
AC251_RS05010 (AC251_04850)	clpC	1059838..1062126 (+)	2289	WP_011002381.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
AC251_RS05015 (AC251_04855)	dut	1062196..1062642 (-)	447	WP_011002380.1	dUTP diphosphatase	-
AC251_RS05020 (AC251_04860)	-	1062639..1063691 (-)	1053	WP_071507062.1	LLM class flavin-dependent oxidoreductase	-
AC251_RS05025 (AC251_04865)	coaBC	1063688..1064893 (-)	1206	WP_011002378.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
AC251_RS05030 (AC251_04870)	-	1065042..1065617 (+)	576	WP_028853530.1	YdcF family protein	-
AC251_RS05035 (AC251_04875)	lspA	1065657..1066178 (-)	522	WP_011002376.1	signal peptidase II	-

Sequence

Protein

• Length: 762 a.a.
• Molecular weight: 83548.71 Da
• Isoelectric Point: 6.2902

>NTDB_id=151799 AC251_RS05010 WP_011002381.1 1059838..1062126(+) (clpC) [Ralstonia pseudosolanacearum strain EP1]
MIAQELEVSLHMAFVEARQARHEFITVEHLLLALLDNPTAAEVLRACAANIEDLRTHLKNFIADNTPVVPGTDEVDTQPT
LGFQRVIQRAIMHVQSTSNGKKEVTGANVLVAIFGEKDSHAVYYLQQQGVTRLDVVNFISHGIRKDQAEPAKHGDSNPEG
EAGDGKESPLEQFTQNLNALAKAGKIDPLIGREQEVERVVQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRITKGEVPDI
LARSVVYSLDMGALLAGTKYRGDFEQRLKGVLKSLKDNPNAILFIDEIHTLIGAGAASGGTLDASNLLKPALSSGALKCI
GATTFTEYRGIFEKDAALSRRFQKIDVVEPSIDQTVQILRGLKSRFEEHHGVKYAASALTAAAELSARFITDRHLPDKAI
DVIDEAGAAQRILPKSKQKKTIGKGEIEDIVSRIARVPPQSVSQDDRSKLQTLERDLKSVVFGQDPAIDALASAIKMSRA
GLGKTDKPIGSFLFSGPTGVGKTEVAKQLAFILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHC
VLLLDEIEKAHPDIFNILLQVMDHGSLTDNNGRKADFRNVIIVMTTNAGAETMNKATIGFTTTREQGDEMADIKRMFTPE
FRNRLDATISFRSLDEDIILRVVDKFLMQLEEQLHEKKVDAVFTEKLRRFLAKKGFDPLMGARPMQRLIQDMIRKALADE
LLFGKLVNGGKVAVDLDDADAVKLEFSENEAPPAPAQEEAEA

Nucleotide

• Length: 2289 bp

>NTDB_id=151799 AC251_RS05010 WP_011002381.1 1059838..1062126(+) (clpC) [Ralstonia pseudosolanacearum strain EP1]
ATGATCGCGCAAGAACTGGAAGTCAGCCTGCACATGGCGTTTGTCGAAGCCCGCCAGGCTCGCCACGAATTCATTACGGT
GGAGCATCTGCTGCTTGCGCTGCTGGACAATCCGACGGCGGCGGAAGTGCTGCGCGCCTGCGCCGCCAACATCGAAGACC
TCCGCACGCACCTGAAGAACTTCATCGCCGACAACACGCCGGTGGTGCCGGGCACGGACGAGGTGGACACGCAGCCGACG
CTGGGCTTCCAGCGCGTGATCCAGCGCGCCATCATGCACGTGCAGTCGACCTCCAACGGCAAGAAGGAGGTGACGGGCGC
CAATGTGCTGGTGGCCATCTTCGGCGAGAAGGACTCCCACGCGGTCTACTACCTGCAGCAGCAGGGCGTGACGCGGCTGG
ACGTCGTCAACTTCATCAGCCACGGCATCCGCAAGGACCAGGCCGAGCCGGCCAAGCACGGCGACAGCAACCCGGAGGGC
GAAGCCGGCGACGGCAAGGAAAGCCCGCTGGAGCAGTTCACCCAGAACCTGAACGCGCTGGCCAAGGCCGGCAAGATCGA
TCCGCTGATCGGCCGCGAGCAGGAAGTCGAGCGCGTGGTGCAGGTGCTGTGCCGTCGCCGCAAGAACAATCCGCTGCTGG
TGGGCGAGGCGGGCGTCGGCAAGACGGCGATCGCCGAAGGGCTGGCATGGCGCATCACCAAGGGCGAGGTGCCGGACATC
CTGGCCCGGTCCGTGGTGTATTCGCTCGACATGGGCGCGCTGCTGGCCGGCACCAAGTATCGTGGCGACTTCGAGCAGCG
GCTCAAGGGCGTGCTGAAGTCGCTCAAGGACAACCCGAACGCGATCCTGTTCATCGACGAAATCCATACGCTGATCGGCG
CCGGCGCCGCATCGGGCGGCACGCTGGACGCGAGCAACCTGCTCAAGCCGGCGCTGTCGTCGGGCGCGCTCAAGTGCATC
GGCGCGACCACCTTCACCGAATACCGGGGCATCTTCGAGAAGGACGCGGCGCTGTCGCGGCGCTTCCAGAAGATCGACGT
GGTGGAGCCGTCCATTGACCAGACCGTGCAGATCCTGCGTGGGCTGAAGTCGCGGTTCGAGGAGCACCACGGCGTCAAGT
ACGCGGCGTCCGCCCTGACGGCGGCGGCTGAGCTGTCGGCGCGCTTCATTACTGACCGCCACCTGCCGGACAAGGCGATC
GACGTGATCGACGAGGCCGGCGCGGCGCAGCGCATCCTGCCGAAGTCGAAGCAGAAGAAGACCATCGGCAAGGGCGAGAT
TGAAGACATCGTGTCGCGCATCGCCCGTGTCCCGCCGCAAAGCGTGTCGCAGGACGACCGCAGCAAGCTGCAGACGCTGG
AGCGCGATCTGAAGTCGGTCGTGTTCGGGCAGGACCCGGCCATCGACGCGCTGGCTTCGGCCATCAAGATGTCGCGTGCC
GGGCTGGGCAAGACCGACAAGCCGATCGGCTCGTTCCTGTTCTCCGGCCCGACCGGCGTCGGCAAGACCGAGGTCGCCAA
GCAGCTGGCGTTCATCCTGGGCATCGAGCTGATCCGCTTCGACATGTCGGAGTACATGGAACGCCATGCGGTGAGCCGGC
TGATCGGCGCGCCTCCGGGCTACGTCGGGTTCGACCAGGGCGGCCTGCTGACCGAGGCCATCACCAAGAAGCCGCACTGC
GTGCTGCTGCTGGACGAAATCGAGAAGGCCCACCCGGACATCTTCAACATCCTGCTGCAAGTGATGGACCACGGCTCGCT
GACGGACAACAACGGCCGCAAGGCGGATTTCCGCAACGTGATCATCGTCATGACGACCAACGCGGGCGCCGAGACGATGA
ACAAGGCCACCATCGGCTTCACCACGACGCGCGAGCAGGGCGACGAGATGGCCGATATCAAGCGGATGTTCACGCCGGAG
TTCCGCAACCGCCTGGATGCGACCATCAGCTTCCGCTCGCTGGACGAGGACATCATCCTGCGCGTGGTCGACAAGTTCCT
GATGCAGCTGGAAGAGCAGCTGCACGAGAAGAAGGTGGACGCCGTCTTCACCGAGAAGCTGCGCCGCTTCCTGGCGAAGA
AGGGCTTCGACCCGCTGATGGGCGCGCGGCCGATGCAGCGCCTGATCCAGGACATGATCCGCAAGGCGCTGGCCGACGAG
CTGCTGTTCGGCAAGCTGGTCAACGGCGGCAAGGTGGCGGTGGACCTGGACGATGCCGACGCGGTCAAGCTGGAGTTCTC
CGAGAACGAGGCGCCGCCCGCGCCCGCGCAGGAAGAGGCGGAAGCCTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (212-324)

• AAA domain (Cdc48 subfamily) (AAA_2) (487-647)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (654-734)

• AAA lid domain (AAA_lid_9) (351-454)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (13-62)

3D structure

• AlphaFold DB: Q8XWL0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	40.718	100	0.432
clpC	Streptococcus thermophilus LMG 18311	38.095	100	0.409
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	42.582	95.538	0.407
clpC	Streptococcus thermophilus LMD-9	43.614	84.252	0.367